Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g930 ATGAGTGATGCTATGCTGCCTGCTTATGATAGAGAGCTTTACCAATGTAAGCTATTGCGCCAATGGGGAAGAGGGCCCTTGATATTATTGGATGTTGAGTCATTAGGTAGGAATTGTGGCACATCTTGTACTGTATATGGAATGCATTATGATGGGATTGTTTATGAAGCTGTTGTCACATGGAATACACTCATAGATTGTCATTGTAAGTCTGGGCACCACAATAAAGCAGAGGAGTTGTTTGAGGCAATGCAGAATAGTGGTTGCTCTCCTTTCACTACAACATATGATATTATGATTAATTCTTCTGGGGAGCAGGAGAGATGGGAGGATGTGAAGACTTTGTTGGGGAAGATGCAGATTTCTTGGGATGGCTGCCACTCATGCACATGGGGACTCCACTCTCACGCACAGCCATGGACGACCTCACCTAGGAGATCTCCATGTTGCAACATGGCTCCAGAAAAGGACCCATTTTCCATGAGCTGCAACTTCAAAGAAGGCATACATAGCCTGGATTCTTATATAAATCTCCGACAACGTGCAGCATATAAAGCATCAGATTGGAAGGATTAA 576 43.58 MSDAMLPAYDRELYQCKLLRQWGRGPLILLDVESLGRNCGTSCTVYGMHYDGIVYEAVVTWNTLIDCHCKSGHHNKAEELFEAMQNSGCSPFTTTYDIMINSSGEQERWEDVKTLLGKMQISWDGCHSCTWGLHSHAQPWTTSPRRSPCCNMAPEKDPFSMSCNFKEGIHSLDSYINLRQRAAYKASDWKD* 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 17070454 17071827 - Vvi19g930 Vvi19g930 782429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g930 191 TIGRFAM PPR: pentatricopeptide repeat domain 59 91 IPR002885 -
Vvi19g930 191 Pfam PPR repeat family 58 102 IPR002885 -
Vvi19g930 191 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 57 91 IPR002885 -
Vvi19g930 191 PANTHER OS02G0759500 PROTEIN 1 191 - -
Vvi19g930 191 Gene3D Tetratricopeptide repeat domain 44 156 IPR011990 GO:0005515
Vvi19g930 191 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 1 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g930 - - - vvi:100263329 129.028
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .