Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g937 ATGAAGACAAGGGGAGATATTACACCCGTCACCTGCACACTAAAAATGGCGAGTCTCTCCAATTCTGTGAAACTCAAGTATATTAAACTTGGCTACCAGTACCTTGTCAACCACATTCTCACCTTCTTTCTCATACCAATTCTCATGGGTTTTCTCATTAAAATCCTCAGCGAATTCTTCAGAGGTCTGAAAACCGGGACTAAGACCAAGGACATCGATATTCTTATTGTGAATTGCAGTATAGTTTCACCTACTCCATCACTGTCTGCTATGGTGATTAACAAGTACAAATTGAGGATGGTCAGCACTGAGATCACCACTCCCAATTATTATAGCGGCAACGAGAGATCAATGCTGATGATAAGGCTTACCGGTGTATCCATGAACAAGAAGACACACAAGGGATACAAGGGGTTTCACTCTCTAAAGACCTGA 435 41.84 MKTRGDITPVTCTLKMASLSNSVKLKYIKLGYQYLVNHILTFFLIPILMGFLIKILSEFFRGLKTGTKTKDIDILIVNCSIVSPTPSLSAMVINKYKLRMVSTEITTPNYYSGNERSMLMIRLTGVSMNKKTHKGYKGFHSLKT* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 17407194 17408381 - Vvi19g937 Vvi19g937 782436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g937 144 PANTHER 3-KETOACYL-COA SYNTHASE 5-RELATED 100 123 - -
Vvi19g937 144 PANTHER 3-KETOACYL-COA SYNTHASE 5-RELATED 64 99 - -
Vvi19g937 144 PANTHER 3-KETOACYL-COA SYNTHASE 5-RELATED 18 57 - -
Vvi19g937 144 PANTHER 3-KETOACYL-COA SYNTHASE 18 57 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi19g937 144 PANTHER 3-KETOACYL-COA SYNTHASE 100 123 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi19g937 144 PANTHER 3-KETOACYL-COA SYNTHASE 64 99 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi19g937 144 Pfam FAE1/Type III polyketide synthase-like protein 52 99 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vvi19g937 144 SUPERFAMILY Thiolase-like 64 120 IPR016039 GO:0016746
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g937 K15397 KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199] - pop:7489345 84.7297
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g937 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .