Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g939 ATGAAGCAATCCAAGGATCCATTTGAAGTGGCATTTGAGGAATCATCACCACCTGATTCACCTGTTGAGGAGATTGTTGGTGGACAAATCGAAGATGAAGATGATGCTAATGTCAATGTTCATCCCACATCAACACCCTCTGCTGCTCCATCTAGTGGAACCACGGTACCACCCACTGCAAAGTCCAAAGATGAAGATGAGGAAGAAGAGGAGGAGAACATGGATGTGGAGCTTGGAAAGCTCCCAACTTCTGGTGATCCTCATAAAATGGCCAAGATGCAGGCTATCTTATCACAGTTCACTGAGGAACAGATGAGCAGGTATGAATCCTTTAGGAGATCTGGATTTCAAAAAGCAAACATGAAAAAGTTGCTTGTGAGCATTACTGGAAGCCAAAAAATTTCAGCACCAATGACAATTGTAGCATCAGGAATAGCAAAAATGTTTGTTGGTGAGCTTGTTGAAACAGCTAGAATGGTTATGACTGAGAGAAAGGAAACAGGACCGATTAGGCCTTGCCACATTAGAGAAGCATATAGAAGATTAAAGCTTGAAGGCAAGGTGCCAAGGAGATCAGTGTCGCGCCTTTTCCGATAG 597 43.38 MKQSKDPFEVAFEESSPPDSPVEEIVGGQIEDEDDANVNVHPTSTPSAAPSSGTTVPPTAKSKDEDEEEEEENMDVELGKLPTSGDPHKMAKMQAILSQFTEEQMSRYESFRRSGFQKANMKKLLVSITGSQKISAPMTIVASGIAKMFVGELVETARMVMTERKETGPIRPCHIREAYRRLKLEGKVPRRSVSRLFR* 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 17427976 17439967 + Vvi19g939 Vvi19g939 782438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g939 198 MobiDBLite consensus disorder prediction 1 88 - -
Vvi19g939 198 SUPERFAMILY Histone-fold 100 189 IPR009072 GO:0046982
Vvi19g939 198 Pfam hTAFII28-like protein conserved region 96 181 IPR006809 GO:0005634|GO:0006367
Vvi19g939 198 PANTHER TAFII28-LIKE PROTEIN-RELATED 1 198 - -
Vvi19g939 198 CDD TAF11 100 183 IPR006809 GO:0005634|GO:0006367
Vvi19g939 198 MobiDBLite consensus disorder prediction 39 59 - -
Vvi19g939 198 Gene3D Histone, subunit A 100 189 IPR009072 GO:0046982
Vvi19g939 198 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED 1 198 IPR045127 GO:0005669|GO:0006367|GO:0051123
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g939 K03135 TAF11; transcription initiation factor TFIID subunit 11 - vvi:100249829 357.066
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g939 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .