Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g940 ATGGCTTTCTGGGGAATTGAAGTGAAACCTGGAAAGCCTTTTACTCATTCATTTGATGGCCAGCGTGGGAGGCTTCACATTTCCCAGGCAACATTGGGGATAGGTGCTGCAAGCAAAAAAAGCTTAGTACAGTGTAATGTAGGCAATAAGAGTCCTGTTCTCTTGTGCTGCTTGTTGCCTGATAAGACAGAATCATGCACTTTGAGTTTAGAATTTGAGGAGGTTGAAGAAGTGATCTTCTCTGTTATTGGTCCGCGGAGTGTTCACCTTACTGGTTATTATCTCGGTAATGGCCGGCATTCCAATTTTAATGAGGACTCAGAATCCTATGGAGAAGATATTGCAGATACAGAGACAGAGAAATCTAATGACCATGGTGAAGAAGATGACTATGAGGATAGTTTCATTGATGATGGTGAACTAGAGGTTTTCCCTTCTTCACCAGTTTCCAGTGATGGGGTTTTGCTTGAGGAGAAATTGGATGGTAAAAAAACCAACAACGGGAAGAGCAGCCACCGAAGACTTAAGAAGAAGTACCAGTTGAGTGAATCTGATGATGACATTAGTTTGCAACAAAATATTGCCAAAGGTAGTGCTGGTGTCCTCGTGTTGGAGAGTGATAGTGAAGATAAGATCCCAATTTCCTCCCTATATAAGAGTAAAACCATTGAAAAGAATGCAAAACTTGAAGAAGAAGAAGAAGAAGAAGAAAAGAAAGCTGGAAATGGTATAGGAGGAGAGAGAGGCCACAATAAGCTAGAAGATGGAAAAGGTCACAAGGACACAGAAGAGAAAGAAAATGCAGGCACAGAAAAAGATGGCAATCATTCTATTGGATCAAAAAGAAAAAATAATGCTGTTGGCATAGGTGCTGGGCCTGAAAGGCAATCTGACCTGCCAATTGGTTCTGTCCTGCATTCTACTGAATTGGGCCCTGAAAATGGCAGAAAGTCAAAGAAGAAAAGGAAAGATCGGTCTAAAGGGGTAAAGCATCTGGAGGTTGACAGTGTTAACCATAAAAATGACCTTAAAGAGGATAAAGCCCCACAAAACGAGAATAAGGCTGATAACATGGACCAGAATCTGCCGGAAAGAAAAGAAAATCAGAGGCCTAACAGTTATAAGAGTTGTGACACAAAGGTGGACCAATTAGCTGGTGACAATCAGAGTGATGAGAAAAAGATAAAGAGGAAGAGAAAGAAGAGTAAAACACAGGAGAATGAGGGTGTTGCTAATATGGAAGTACCTCCTTTGTCAATGAACAAAAAGAGTGGATCCCATTTGGAAGTTAAGGACAGGAACTCTGATGCCAATTCATCCCAAGTTAGAATGATGTCCAATGGATTGGTGATTGAGGAGCTAATAACTGGAAAACCAGATGGCAAAATAGCTTGTCAAGGAAAGAAGGTCAGTGTCTATTACACAGGCAAGTTAAAAGATAGTGGACAAATCTTTGACTCAAATATTGGCAGAGCTCCTCTTAAGTTCCGCCTAGGTGCAGGAAAAGTTATAAAGGGATGGGATGTCGGTCTTGATGGTATGCGAGTTGGAGATAAGAGAAGACTCGTAATCCCACCATCAATGGGTTATGGGAATGAAGGAGCTGGTGATAATATTCCACCAAATTCATGGCTAGTATTCGATGTTGAATTGGCTGGTGCCCGGTGA 1668 41.49 MAFWGIEVKPGKPFTHSFDGQRGRLHISQATLGIGAASKKSLVQCNVGNKSPVLLCCLLPDKTESCTLSLEFEEVEEVIFSVIGPRSVHLTGYYLGNGRHSNFNEDSESYGEDIADTETEKSNDHGEEDDYEDSFIDDGELEVFPSSPVSSDGVLLEEKLDGKKTNNGKSSHRRLKKKYQLSESDDDISLQQNIAKGSAGVLVLESDSEDKIPISSLYKSKTIEKNAKLEEEEEEEEKKAGNGIGGERGHNKLEDGKGHKDTEEKENAGTEKDGNHSIGSKRKNNAVGIGAGPERQSDLPIGSVLHSTELGPENGRKSKKKRKDRSKGVKHLEVDSVNHKNDLKEDKAPQNENKADNMDQNLPERKENQRPNSYKSCDTKVDQLAGDNQSDEKKIKRKRKKSKTQENEGVANMEVPPLSMNKKSGSHLEVKDRNSDANSSQVRMMSNGLVIEELITGKPDGKIACQGKKVSVYYTGKLKDSGQIFDSNIGRAPLKFRLGAGKVIKGWDVGLDGMRVGDKRRLVIPPSMGYGNEGAGDNIPPNSWLVFDVELAGAR* 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 17459711 17467129 + Vvi19g940 Vvi19g940 782439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g940 555 MobiDBLite consensus disorder prediction 328 373 - -
Vvi19g940 555 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Vvi19g940 555 SUPERFAMILY FKBP-like 436 552 - -
Vvi19g940 555 MobiDBLite consensus disorder prediction 223 279 - -
Vvi19g940 555 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 300 551 - -
Vvi19g940 555 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 1 245 - -
Vvi19g940 555 Coils Coil 219 239 - -
Vvi19g940 555 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 464 551 IPR001179 GO:0003755
Vvi19g940 555 Gene3D Nucleoplasmin core domain 1 99 - -
Vvi19g940 555 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 467 555 IPR001179 GO:0003755
Vvi19g940 555 MobiDBLite consensus disorder prediction 145 185 - -
Vvi19g940 555 Gene3D - 419 555 IPR046357 GO:0003755
Vvi19g940 555 MobiDBLite consensus disorder prediction 202 441 - -
Vvi19g940 555 Coils Coil 388 408 - -
Vvi19g940 555 PANTHER PEPTIDYLPROLYL ISOMERASE 300 551 - -
Vvi19g940 555 PANTHER PEPTIDYLPROLYL ISOMERASE 1 245 - -
Vvi19g940 555 MobiDBLite consensus disorder prediction 101 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g940 K14826 FPR3_4; FK506-binding nuclear protein [EC:5.2.1.8] - vvi:100267010 1072.38
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g940 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013918 1 0 0 0 0 1 1 1 1 0 0 1 0 1 1 0 1 2 1 1 1 1 1 0 2 0 1 2 1 1 23