Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g941 ATGGATTCAACTTATGGAAAAAGCAGAGATAGGATAAGCAATCTGCCAGATGCAGTTCTTTGTCACATCATTTCATTTCTTCCCACCAAATTTGCTGTGGGAACTAGTGTCCTCTCAAAAAGATGGAGGTACCTTTGGGCTTCCATCCCTAACCTTGACTTTGATGATGATTTACTGCTGGATCGAGACAAGCCCATTGGGGATTCTGAAAGAAGCATATGCTTTAAGAATTTTGTGGATAAAGTATTGCTTCATGGCAGTATCTCATGTATTAGAAAGTTTCGTCTCAAATGCAGTGACCATGAGTTGGACTCTGCTGTTAATTCCTGGATCTGCACAGCACTTGAGCGTAATGTCCAGGAGCTTGATCTCTATTTTGATACGGAATATCCTATTGAATTGCCTCCTAAATTCTTCTTCTGTAAAACTCTAGTTGTTCTGAAACTCTGTCCTGTCTTGGAAGAATTGGTTATAGAAAGATGGAGATTGGATGAACAATGGGTTTTTAATGTCTCTGCACCCACATTGAAAAGTTTGGCAATATATTTTTCTAAGTACAAACTTGTGGTTGATGCCCCAAATCTTGAGTACCTTAGTATCACAGATTTTGTTTCAGAGGACTATTTGATGAGCAACCTATCTTCCTTGGTTAAAGCATATGTTAATGTTGGTCCCACTATTAGAGGAATTGATGACCAAATTCTGTATCGTGGCCGTATATATGAGCTCCTTAGAGGGATCTCAAATGTTAAACATCTATCATTATCTGGTGAGACTTTGCATTCTCTCAGTGGTATGTTTTGTGGTTATGAGCTCCCTGCATTTCATAGTGTGACTCGTTTAGAGCTTGAAGTTGATTACGGCTATGGCTTGGAGTTTCTGAAAGAGTTTCTTGACACGTCACCTAATTTAGAAATTCTTATCCTTGAAAATGTTAACAAGGACGAATGTGAAATTGAAGAGTGGACTCTGCCACTTCAAGTGCCTACCTGTGTGGAATTGCACCTCAATGAAGTTGAAATTAAGAAATTTGATGGGTTAGATTATGAGCTTGGAGCAATAGAGTTCCTGCTGAAGAATGCGAGAGTTTTGAAGAAGATGAGCATAGATTGTCGAGATTGGCGTGATGGGCAAGAATTTTGTGTTTGTAAAAAGCTATCAGGGTTTACAAGGGCCTCCATGAGTTGTGAATTTAGTGTTTTTTGCCATTGTGGAGGCATTCGTATGTTTTCTTGA 1236 39.08 MDSTYGKSRDRISNLPDAVLCHIISFLPTKFAVGTSVLSKRWRYLWASIPNLDFDDDLLLDRDKPIGDSERSICFKNFVDKVLLHGSISCIRKFRLKCSDHELDSAVNSWICTALERNVQELDLYFDTEYPIELPPKFFFCKTLVVLKLCPVLEELVIERWRLDEQWVFNVSAPTLKSLAIYFSKYKLVVDAPNLEYLSITDFVSEDYLMSNLSSLVKAYVNVGPTIRGIDDQILYRGRIYELLRGISNVKHLSLSGETLHSLSGMFCGYELPAFHSVTRLELEVDYGYGLEFLKEFLDTSPNLEILILENVNKDECEIEEWTLPLQVPTCVELHLNEVEIKKFDGLDYELGAIEFLLKNARVLKKMSIDCRDWRDGQEFCVCKKLSGFTRASMSCEFSVFCHCGGIRMFS* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 17498252 17500391 + Vvi19g941 Vvi19g941 782440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g941 411 Gene3D Ribonuclease Inhibitor 74 405 IPR032675 -
Vvi19g941 411 SMART 9598neu4hmm 330 401 IPR006566 -
Vvi19g941 411 Pfam FBD 327 369 IPR006566 -
Vvi19g941 411 SUPERFAMILY F-box domain 8 52 IPR036047 GO:0005515
Vvi19g941 411 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 10 149 - -
Vvi19g941 411 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 147 400 - -
Vvi19g941 411 SUPERFAMILY RNI-like 113 376 - -
Vvi19g941 411 Pfam F-box domain 12 49 IPR001810 GO:0005515
Vvi19g941 411 Gene3D - 4 52 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g941 - - - vvi:104877721 792.727
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g941 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000512 0 3 0 0 0 2 0 1 0 4 2 2 0 3 4 0 2 0 0 1 3 6 12 13 12 5 4 6 10 1 96