Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g943 ATGGAGATTACAAATGTGACGGAGTATGAGGCTATTGCAAAGCAAAAGTTGCCCAAGATGGTGTTTGACTATTATGCATCAGGTGCAGAGGACCAGTGGACTCTGTATCAGAACAGACATGCTTTTTCACAGATTCTGTTTCGGCCCCGCATTCTTATTGATGTAAGCAAGATAGACATGACCACCACTGTCCTGGGTTTCAAGATTTCAATGCCTATTATGATCGCCCCAACTGCCATGCAGAAAATGGCTCACCCTGAAGGAGAGTATGCAACGGCAAGAGCCGCATCAGCTGCTGGAACAATTATGACCTTATCTTCATGGGCTACTTCAAGCGTGGAAGAGGTTGCTTCAACAGGACCTGGAATCCGCTTTTTTCAGCTCTATGTATATAAGGACAGGCATGTAGTTGCTCAGCTTGTTAGAAGAGCTGAAAGGGCAGGCTTCAAGGCTATTGCCCTTACTGTTGATACCCCTAGGCTGGGGCGCAGAGAGGCTGACATCAAGAACAGATTCACTTTACCCCCATTCCTGACTCTGAAGAACTTTGAAGGCTTGGACCTTGGGAAGATGGATAAAGCTGATGACTCTGGACTTGCTTCATATGTTGCTGGTCAAATTGATCGAACCCTGAGCTGGAAGGATGTGAAGTGGCTTCAGACAATCACCAACTTGCCAATTCTTGTAAAGGGTGTGCTCACAGCTGAGGATACCAGGTTAGCTATACAAGCTGGTGCAGCAGGGATTATTGTATCCAATCATGGAGCTCGCCAACTTGATTATGTCCCTGCCACTATCATGGCTCTGGAAGAGGTTGTCAAAGCTGCACAAGGTCGTGTGCCTGTGTTTTTGGATGGTGGTGTCCGGCGTGGAACAGATGTCTTTAAAGCCTTGGCACTGGGAGCCTCTGGAATATTTATTGGGCGGCCTGTGGTGTTTTCATTGGCCGCAGAAGGAGAGGCTGGTGTTAGAAAAGTACTCCAGATGTTGCGTGAGGAGTTTGAGCTGACCATGGCTTTAAGCGGATGCCGTTCTCTCAAAGAAATCACTCGTGATCACATTGTCACCGAATGGGAAGTTCCTCCCCCTGGCTCTCGCCCCCTACCCCGGTTATAG 1116 48.21 MEITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVPPPGSRPLPRL* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 17510563 17514626 + Vvi19g943 Vvi19g943 782442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g943 371 ProSiteProfiles FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. 1 359 IPR037396 -
Vvi19g943 371 Pfam FMN-dependent dehydrogenase 13 355 IPR000262 GO:0016491
Vvi19g943 371 PIRSF Al-hdrx_acd_dh 1 359 IPR012133 GO:0010181|GO:0016491
Vvi19g943 371 PANTHER PEROXISOMAL (S)-2-HYDROXY-ACID OXIDASE-LIKE ISOFORM X1 1 367 - -
Vvi19g943 371 CDD alpha_hydroxyacid_oxid_FMN 8 351 IPR012133 GO:0010181|GO:0016491
Vvi19g943 371 SUPERFAMILY FMN-linked oxidoreductases 2 356 - -
Vvi19g943 371 ProSitePatterns FMN-dependent alpha-hydroxy acid dehydrogenases active site. 252 258 IPR008259 GO:0016491
Vvi19g943 371 Gene3D Aldolase class I 1 366 IPR013785 -
Vvi19g943 371 PANTHER S -2-HYDROXY-ACID OXIDASE-RELATED 1 367 - -
Vvi19g943 371 SMART IMPDH_2 40 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g943 K11517 HAO; (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] - vvi:100244701 690.263
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000483 3 12 4 3 2 4 2 3 4 4 4 4 5 4 4 7 4 4 3 4 3 3 2 3 2 3 3 4 2 4 113