Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g944 ATGACCCGCTCACCCCCACCTCGTCTCAATCACTTATTGCCCACCATAAGGCCCAACATAAACTGCTCTCTCCACTCCCCTTCTGTACTCCATTTCCCAAAGCACACATCATCAAGCACTGGCGTTGCTACTGTTAAAACCACGCTCCCAAAAGAGAAGGATGGCTTTTCTTCCTCTGTCTCACCGCAATGGAACTTTTTGCAAAGCGCTGCTGCCATGGCCTTGGATGCCGTGGAGACCGCGTTGGTAGCACGCGAGACCCAGCACCCTCTTCCCAAGACCGCAGACCCCAGAGTGCAAATCGCCGGTAATTTTGCTCCGGTACCTGAGCAGCCCGTCCATCACTCTCTCCCGGTGGATGGTCGAATCCCAGACTGCATTCAAGGCGTATACACTCGGAACGGCGCCAATCCCCTCCACAAGCCTGTCGCCGGCCACCATCTCTTCGACGGAGACGGCATGCGTCTGATCCAAGAGCGAGATTTCGGCCGGCCGGTTCACGGCACCGGCGTTGCCAACGCTGGGCTCGTCTATTTCAACCGTAGACTCCTCGCCATGTCGGAGGACGACTTGCCGTACCAAATCCGCGTGACCCCTTCCGGAGACCTGGAGACGGTGGGTCGCTACGACTTCGAGGGTCAGCTCCGTTCCACAATGATCGCTCACCCCAAAGTTGATCCAGTGTCTGGAGAGATGTTCGCTCTGAGCTATGATGTGGTCCAGAAGCCATACCTCAACGGTGGCTCTCCTGTGGTCTACGAGAAGAACAAGATGTCGCGGTTCGGGGTGCTGGACAAGAATGCTACTGACGCTTCTGGTATGCGATGGATAGAGGCCCCTGATTGCTTCTGCTTCCATCTCTGGAACGCTTGGGAAGAGCCGGAGACCGATGAAGTCGTGGTGATTGGCTCCTGCATGACTCCACCCGACTCCATTTTCAACGAATGCGACGAAGGCCTCAAGAGCGTCCTCTCCGAAATCAGACTTAATCTGAAGACCGGAAAGTCCACACGCCGCCCTATACTTCCGGAATCGGAGCAAGTGAACTTGGAAGCCGGGATGGTGAACCGGAACCGCCTGGGAAGAAAAACCCAGTTCGCCTATCTGGCCGTGGCTGAGCCATGGCCCAAGGTGTCTGGTTTCGCCAAGGTTGACCTCTCAACTGGGCAAGTCAGCAAGTACATATATGGAGAGCAGAGGTATGGTGGTGAGCCTCTGTTCCTTCCAAGAGACCCCAACTCTGGCAGGGAAGATGATGGGTACATCCTGGCTTTTGTGCACGACGAGAAGACATGGAAATCAGAGCTGCAGATAGTGAACGCCACGAATTTACAGCTAGAAGCTTCTGTGAAACTTCCCTCACGAGTTCCCTATGGATTCCACGGCACCTTCATAAGCTCCAAGGAATTAGAGAAGCAAGCTTGA 1425 55.02 MTRSPPPRLNHLLPTIRPNINCSLHSPSVLHFPKHTSSSTGVATVKTTLPKEKDGFSSSVSPQWNFLQSAAAMALDAVETALVARETQHPLPKTADPRVQIAGNFAPVPEQPVHHSLPVDGRIPDCIQGVYTRNGANPLHKPVAGHHLFDGDGMRLIQERDFGRPVHGTGVANAGLVYFNRRLLAMSEDDLPYQIRVTPSGDLETVGRYDFEGQLRSTMIAHPKVDPVSGEMFALSYDVVQKPYLNGGSPVVYEKNKMSRFGVLDKNATDASGMRWIEAPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRRPILPESEQVNLEAGMVNRNRLGRKTQFAYLAVAEPWPKVSGFAKVDLSTGQVSKYIYGEQRYGGEPLFLPRDPNSGREDDGYILAFVHDEKTWKSELQIVNATNLQLEASVKLPSRVPYGFHGTFISSKELEKQA* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 17645199 17647650 + Vvi19g944 Vvi19g944 782443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g944 474 Pfam Retinal pigment epithelial membrane protein 106 154 IPR004294 GO:0016702
Vvi19g944 474 Pfam Retinal pigment epithelial membrane protein 246 465 IPR004294 GO:0016702
Vvi19g944 474 Pfam Retinal pigment epithelial membrane protein 167 244 IPR004294 GO:0016702
Vvi19g944 474 PANTHER BETA-CAROTENE DIOXYGENASE 246 474 IPR004294 GO:0016702
Vvi19g944 474 PANTHER BETA-CAROTENE DIOXYGENASE 167 245 IPR004294 GO:0016702
Vvi19g944 474 PANTHER BETA-CAROTENE DIOXYGENASE 45 154 IPR004294 GO:0016702
Vvi19g944 474 PANTHER 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED5, CHLOROPLASTIC-RELATED 45 154 - -
Vvi19g944 474 PANTHER 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED5, CHLOROPLASTIC-RELATED 167 245 - -
Vvi19g944 474 PANTHER 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED5, CHLOROPLASTIC-RELATED 246 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g944 K09840 NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] - vvi:100232942 879.011
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g944 . . . . Bpe09g00281 . . . . Cmo04g00691 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00797 Bda12g00789 . Bpe03g00857 . . . . . . Cma16g00460 Car04g00599 Car16g00417 Cpe14g00387 Cpe01g00581 . . . . . . . Cla07g01003 Cam07g1078 Cec07g1150 Cco07g1128 Clacu07g1053 Cmu07g1043 Cre07g1420 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000637 4 3 3 4 4 3 5 3 3 2 3 3 5 3 3 5 3 5 6 3 3 3 3 3 3 3 3 3 3 1 101