Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g945 ATGGCCTTGCAAATGACTTGGCAGCCGAGTCTCCTCCACCAGAAACGCAAGAATGGTCCTCCTCTAGGGTTGAAGAATCTCGGCAACTCCTGCTATCTCAACAGCGTCCTACAGTGCTTGACATACACACCTCCCCTCGCCAATTTCTGCCTCAATCACCTCCATTCTTCACTCTGCGATTCCGCTGTGGATCGAAAACGCGAGTGCCCCTTCTGCATACTGGAGAAGCGAATTGTTCGGTCTTTGAGCATGGATCTCACCCAGGACGCTCCCTCCAAGATCCAGAGCTGTCTCCGGATATTTGCAGAACACTTTCGATTGGGGCGGCAAGAGGATGCCCACGAGTTCTTGCGCTATGTAATTGACGCCTGTCACAACACTTGCCTTCGTCTCAAAAAGTTGAGGCGCAAGGGGAACAACGATAATGGGCCCTCTACTACTAGTGTGGTCAAGGACATCTTTGGGGGTGCTCTGCAGAGTCAGGTCAAGTGTCTCTCTTGCGGGGCTGAGTCCAACAAGACCGATGAGATTATGGATATAAGCCTTGATGTCTTGCATTTCAATTCTCTTAAACAAGCATTACAAAACTTTTTCCAGCCTGAGGTTTTGGACGGTAACAACAAGTACAAATGTGACAATTGTAAGAAATTGGTGTCAGCAAGGAAGCAAATGTCTATTCTTCAAGCACCCAATGTCCTTGTAATCCAGCTCAAGAGATTTGAGGGCTTATATGGTGGGAAGATTGATAAGCTGATTGCATTTGAAGAAGTTTTGGTGCTCTCGAGCTATATGAACAAAGCAAGCCAGGATTCACATCCCGAGTATAACCTTTTTGCTACTATTGTGCATTCAGGCTACTCACCTGAGTCAGGACACTATTATGCATATATCAAGGATGCAATGGGTCGCTGGTATTGCTGCAACGATTCTTATGTTTCACTTTCAACCCTGCAGGGGGTTTTGTCAGAGAAGGTTTACATTCTTTTCTTTTCTCGTACTAATGCAAGGATCTCACCCCCCAGCAAAGCTTTTGCGTCCCATAATGTGAAGAACCGAGATTGCAATGGCAACAATACATCTAAAAATCCAAGGACAGCTCTTCCAGTGAAAACAAGGCATACAAAACAAAATGTCGAACATTCCTCTGGAATGGATACTTCCACTATATCTAAGGTTGATAAGGTGCCTTCTAGCCTACAGATTAAATCGAATAGCTTTGAAAAAACTGTTTCCAAGAGGGTTCTTGCAACTGGTAATGGAAAACTTGATGTGCATAAGAATCAAATATTGGAAAAGAATGGGGATGTGGTGGAGAAAAGCGAGAAAGGTACGCCATCTTTAGCAAACAGCAATGGTTTTAGTATAAATAAAAGAGTTGATGCTGCTGATAGCGTGAATGGCTTTGTATCTGCAAATGAAAATGATAAACTTCAGAATATTAGTGGTAATTCGGGAAAAGTGGATTTGTATGAGGGTAATGTTGTGAAAAGCAGGATGACAGCAGAAGGAAGGTCTAACTTCCATGAAGTGCATAATGGTGGTGTCAAATGTCCCCCTGGTGTTTCAGGGGTTAAGAGAAAATCACAGGACAAGGGTTCATGCATTTTACTTGCACAAGATGCTCATTCTCTGGCAAAAGTTGAAGAATTCAAAGATGGTCTCAAGAAGGAAGCTTCTTTGGTTCTGAGATCTTGTGGTTGGACGGATAGGCTTTATATTTTCATGCATTCAAGGAAGAGGTTATGCGCTCAAAAATCAGGAGACCCTCCAAGCAGCAATGAATCAAAGAAGTCATTTATTGCTGATGCAAAACAATCTTTCATCTCACAAATTCCTGAGTCACTGAAAGAGAAGCTGATTGAACGTCTAAAATCATTCAGCCAGGAGAAACAAGTTTCAGGTCCTTGA 1908 43.29 MALQMTWQPSLLHQKRKNGPPLGLKNLGNSCYLNSVLQCLTYTPPLANFCLNHLHSSLCDSAVDRKRECPFCILEKRIVRSLSMDLTQDAPSKIQSCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGNNDNGPSTTSVVKDIFGGALQSQVKCLSCGAESNKTDEIMDISLDVLHFNSLKQALQNFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQAPNVLVIQLKRFEGLYGGKIDKLIAFEEVLVLSSYMNKASQDSHPEYNLFATIVHSGYSPESGHYYAYIKDAMGRWYCCNDSYVSLSTLQGVLSEKVYILFFSRTNARISPPSKAFASHNVKNRDCNGNNTSKNPRTALPVKTRHTKQNVEHSSGMDTSTISKVDKVPSSLQIKSNSFEKTVSKRVLATGNGKLDVHKNQILEKNGDVVEKSEKGTPSLANSNGFSINKRVDAADSVNGFVSANENDKLQNISGNSGKVDLYEGNVVKSRMTAEGRSNFHEVHNGGVKCPPGVSGVKRKSQDKGSCILLAQDAHSLAKVEEFKDGLKKEASLVLRSCGWTDRLYIFMHSRKRLCAQKSGDPPSSNESKKSFIADAKQSFISQIPESLKEKLIERLKSFSQEKQVSGP* 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 17668877 17700404 - Vvi19g945 Vvi19g945 782444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g945 635 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 275 293 IPR018200 GO:0004843|GO:0006511
Vvi19g945 635 Pfam Ubiquitin carboxyl-terminal hydrolase 23 330 IPR001394 GO:0004843|GO:0016579
Vvi19g945 635 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 23 38 IPR018200 GO:0004843|GO:0006511
Vvi19g945 635 SUPERFAMILY Cysteine proteinases 17 334 IPR038765 -
Vvi19g945 635 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 22 333 IPR028889 -
Vvi19g945 635 Gene3D Cysteine proteinases 16 335 - -
Vvi19g945 635 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 13 336 - -
Vvi19g945 635 MobiDBLite consensus disorder prediction 341 365 - -
Vvi19g945 635 CDD Peptidase_C19E 21 331 - -
Vvi19g945 635 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 13 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g945 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - vvi:100253154 1279.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g945 . . . . . . . . . Cmo04g00689 . Cma09g00749 . . . . Cpe02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe03g00860 . . . . Cmo09g00741 . Cma16g00463 Car04g00597 Car16g00419 Cpe14g00389 Cpe01g00579 . . . . . . . Cla07g01006 Cam07g1081 Cec07g1153 Cco07g1131 . Cmu07g1046 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004811 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 41