Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g949 ATGGCAAGACACAGGACGACTCCTCCCGTCCAAAATCGTTTTCATTACTTTCTGCTGGTGCTTTGTTGCTGCCTGGTGTTTGTTGCATCCTTGAACGAGGAGGGAAACTTTCTTTTGGAGTTCAGAAGATCGCTTATTGACCCTGGTAACAATCTTGCAAGCTGGAGTGCCATGGATTTAACTCCCTGCAATTGGACTGGAATATCGTGCAACGATTCTAAGGTAACTTCTATAAATCTCCATGGGCTCAACTTGTCGGGTACTTTGTCTTCTAGATTCTGCCAACTCCCCCAGTTAACGTCCTTGAACCTGTCCAAAAACTTCATCTCCGGCCCCATTTCTGAAAATCTTGCCTACTTTCTTTATCTGTGTGAGAATTATATTTATGGAGAAATCCCTGATGAGATTGGAAGCTTAACTTCATTGAAGGAGCTTGTGATTTACAGTAACAATCTCACAGGTGCAATTCCCCGGTCAATTAGTAAGCTCAAAAGGCTTCAGTTTATCAGGGCGGGTCACAATTTCCTGTCAGGTTCAATACCACCTGAAATGAGCGAATGCGAGAGCTTAGAACTTCTGGGGCTGGCGCAGAATAGGCTTGAAGGTCCTATTCCTGTGGAGCTTCAGAGACTTAAACATCTTAACAATTTGATCCTCTGGCAAAACCTTTTGACTGGTGAGATTCCACCCGAGATCGGTAACTGTACTAGTGCAGTTGAGATAGATCTTTCTGAAAATCATTTAACTGGGTTTATTCCAAAGGAGTTGGCCCATATTCCTAACCTCCGGTTGCTTCATCTTTTCGAAAACCTTCTCCAGGGGAGTATCCCCAAGGAACTTGGACACCTCACATTCTTGGAAGATTTACAGCTTTTCGACAATCATCTTGAGGGTACTATTCCTCCTCTCATTGGAGTTAACAGTAACCTTTCCATTCTTGACATGTCCGCCAACAATCTTTCAGGCCACATACCAGCACAGCTCTGCAAATTCCAGAAATTGATATTCCTAAGCCTCGGGTCTAATAGGTTATCGGGAAACATCCCTGATGACCTGAAGACATGCAAGCCTCTAATACAACTAATGTTGGGAGATAACCAGCTCACAGGAAGCCTCCCTGTTGAATTGTCCAAACTTCAAAATCTTTCAGCTCTTGAACTCTATCAGAACCGATTCTCTGGGCTAATATCGCCAGAAGTAGGCAAACTTGGGAATCTGAAGAGGCTGCTCTTGTCCAACAATTATTTTGTTGGGCATATACCTCCTGAGATTGGACAATTGGAGGGACTCCTACAGAGGCTTGATTTAAGTAGGAACAGCTTCACTGGCAATCTTCCAGAAGAGCTTGGCAAGCTAGTGAATCTGGAATTGCTGAAACTTTCAGATAACAGACTGAGTGGACTGATACCAGGCAGCTTAGGGGGCCTGACCCGGCTTACAGAACTACAAATGGGGGGCAATCTTTTCAACGGCAGCATTCCCGTTGAACTTGGCCATCTTGGTGCTCTCCAGATCTCCCTCAACATTAGCCATAACGCGCTCTCAGGTACAATTCCAGGTGATTTGGGGAAATTGCAGATGCTGGAATCAATGTACTTGAATAACAATCAGCTTGTTGGTGAAATTCCCGCTTCAATTGGTGACTTGATGAGCCTCCTGGTATGCAACCTTTCTAACAATAACCTGGTAGGAACAGTGCCAAACACCCCTGTTTTTCAGAGGATGGATTCCAGCAATTTTGGTGGAAACAGTGGCTTGTGCAGAGTCGGTTCATACCGTTGTCATCCTTCTTCAACCCCTTCATATAGTCCAAAAGGAAGCTGGATAAAGGAGGGTTCTTCCAGAGAAAAAATAGTAAGCATCACTTCTGTGGTTGTCGGGTTAGTTTCTTTGATGTTTACTGTGGGCGTTTGTTGGGCGATAAAGCATCGTAGGCGAGCTTTTGTTTCACTTGAAGATCAAATAAAACCGAATGTGTTGGATAACTACTACTTCCCCAAAGAAGGGCTCACATATCAGGACCTCTTGGAAGCCACTGGAAATTTTTCAGAGAGCGCAATCATCGGAAGAGGAGCCTGTGGCACTGTCTACAAGGCTGCTATGGCTGATGGTGAGTTGATTGCAGTCAAAAAGCTGAAATCCCGGGGAGATGGAGCTACTGCAGACAACAGCTTCCGCGCTGAGATATCCACTCTTGGGAAAATCAGGCACCGAAACATTGTGAAGCTTCATGGATTCTGCTACCACCAGGACTCTAATCTTCTGTTGTATGAGTACATGGAAAATGGCAGCCTAGGAGAGCAGCTTCATGGGAAGGAAGCAAATTGTTTGCTTGACTGGAATGCTAGGTATAAAATTGCTCTTGGGTCAGCAGAGGGCCTGTCCTATCTCCATTACGACTGTAAGCCCCAAATCATTCACCGGGATATAAAATCAAACAACATTTTACTCGATGAGATGCTTCAAGCCCATGTGGGAGATTTTGGTTTGGCAAAATTGATGGACTTCCCCTGCTCCAAATCCATGTCTGCTGTTGCAGGTTCATATGGCTACATTGCCCCTGAGTATGCTTACACAATGAAAATTACAGAGAAATGTGACATATACAGCTTTGGGGTTGTTCTGCTTGAACTGATCACAGGAAGGACCCCAGTGCAACCCCTGGAACAGGGAGGGGACCTGGTCACTTGGGTTAGAAGATCAATTTGTAATGGGGTTCCAACATCTGAAATCTTGGACAAACGGCTAGATCTCAGTGCTAAAAGGACAATCGAGGAGATGTCACTAGTCCTCAAGATTGCATTGTTCTGTACCAGTCAGTCCCCGCTTAATAGGCCAACAATGAGAGAAGTCATTAACATGCTGATGGATGCGAGGGAGGCGTATTGTGATTCACCAGTGTCTCCAACATCAGAGACCCCGTTAGATGATGACGCTTCTTGTAGAGGTTTTATGGAACCATAG 2964 44.97 MARHRTTPPVQNRFHYFLLVLCCCLVFVASLNEEGNFLLEFRRSLIDPGNNLASWSAMDLTPCNWTGISCNDSKVTSINLHGLNLSGTLSSRFCQLPQLTSLNLSKNFISGPISENLAYFLYLCENYIYGEIPDEIGSLTSLKELVIYSNNLTGAIPRSISKLKRLQFIRAGHNFLSGSIPPEMSECESLELLGLAQNRLEGPIPVELQRLKHLNNLILWQNLLTGEIPPEIGNCTSAVEIDLSENHLTGFIPKELAHIPNLRLLHLFENLLQGSIPKELGHLTFLEDLQLFDNHLEGTIPPLIGVNSNLSILDMSANNLSGHIPAQLCKFQKLIFLSLGSNRLSGNIPDDLKTCKPLIQLMLGDNQLTGSLPVELSKLQNLSALELYQNRFSGLISPEVGKLGNLKRLLLSNNYFVGHIPPEIGQLEGLLQRLDLSRNSFTGNLPEELGKLVNLELLKLSDNRLSGLIPGSLGGLTRLTELQMGGNLFNGSIPVELGHLGALQISLNISHNALSGTIPGDLGKLQMLESMYLNNNQLVGEIPASIGDLMSLLVCNLSNNNLVGTVPNTPVFQRMDSSNFGGNSGLCRVGSYRCHPSSTPSYSPKGSWIKEGSSREKIVSITSVVVGLVSLMFTVGVCWAIKHRRRAFVSLEDQIKPNVLDNYYFPKEGLTYQDLLEATGNFSESAIIGRGACGTVYKAAMADGELIAVKKLKSRGDGATADNSFRAEISTLGKIRHRNIVKLHGFCYHQDSNLLLYEYMENGSLGEQLHGKEANCLLDWNARYKIALGSAEGLSYLHYDCKPQIIHRDIKSNNILLDEMLQAHVGDFGLAKLMDFPCSKSMSAVAGSYGYIAPEYAYTMKITEKCDIYSFGVVLLELITGRTPVQPLEQGGDLVTWVRRSICNGVPTSEILDKRLDLSAKRTIEEMSLVLKIALFCTSQSPLNRPTMREVINMLMDAREAYCDSPVSPTSETPLDDDASCRGFMEP* 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 18056452 18061495 + Vvi19g949 Vvi19g949 782448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g949 987 Gene3D Ribonuclease Inhibitor 119 204 IPR032675 -
Vvi19g949 987 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vvi19g949 987 SMART LRR_typ_2 211 235 IPR003591 -
Vvi19g949 987 SMART LRR_typ_2 452 475 IPR003591 -
Vvi19g949 987 SMART LRR_typ_2 139 163 IPR003591 -
Vvi19g949 987 SMART LRR_typ_2 403 427 IPR003591 -
Vvi19g949 987 SMART LRR_typ_2 259 283 IPR003591 -
Vvi19g949 987 SMART LRR_typ_2 525 549 IPR003591 -
Vvi19g949 987 SMART LRR_typ_2 476 500 IPR003591 -
Vvi19g949 987 Pfam Leucine rich repeat 431 488 IPR001611 GO:0005515
Vvi19g949 987 SUPERFAMILY RNI-like 240 564 - -
Vvi19g949 987 Pfam Protein kinase domain 683 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g949 987 SMART serkin_6 682 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g949 987 PANTHER OS07G0152200 PROTEIN 270 967 - -
Vvi19g949 987 PANTHER OS07G0152200 PROTEIN 18 283 - -
Vvi19g949 987 ProSiteProfiles Protein kinase domain profile. 682 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g949 987 Gene3D Ribonuclease Inhibitor 33 118 IPR032675 -
Vvi19g949 987 Gene3D Transferase(Phosphotransferase) domain 1 760 968 - -
Vvi19g949 987 Gene3D Ribonuclease Inhibitor 205 306 IPR032675 -
Vvi19g949 987 Gene3D Ribonuclease Inhibitor 307 600 IPR032675 -
Vvi19g949 987 MobiDBLite consensus disorder prediction 965 987 - -
Vvi19g949 987 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 270 967 - -
Vvi19g949 987 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 18 283 - -
Vvi19g949 987 SUPERFAMILY L domain-like 34 304 - -
Vvi19g949 987 SUPERFAMILY Protein kinase-like (PK-like) 659 955 IPR011009 -
Vvi19g949 987 Gene3D Phosphorylase Kinase; domain 1 650 759 - -
Vvi19g949 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76482 PF00069 Pkinase 2.10E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g949 - - vvi:100264502 1655.96