Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g950 ATGGATGAAGAAACCTTTTTTCCATCTGATACTGATATTGATTTCAGCTTCACCTCCACCACCTCCTCCGTCACCACAGCCACCGACCGCACCTTTGCATCCTCCAGCGCTCGCACCAGCCTCGCCCGCTCCAGTCTCACTCTCAGCTTCAACGAGTCACGCCTCTCCACCTCAACTGCCGGAGCCACCGCTGCGGCCAACCTCCACCATCGTCCTCACCGCAAATCTGACCCGCATTGGTCGGCAATCAACGCCGCCACTACGTTGTCGTCAGATGGAGCACTTCACCTTCGCCACCTCAAGCTCCTCCGCCACCTAGGCACCGGCAACCTCGGCCGTGTCTTCCTCTGTCGCCTCCGAGACTGCGACGCTGCCAACTTCGCCCTCAAGGTAGTGGATAGAGATGCTCTAACGAACAAGAAGCTCTCTCACGTGCAAATGGAGGCCGACATCCTCTCAGCGCTCGACCACCCTTTTCTGCCTACGCTCTATGCCCACCTCGAAGTCTCCCACTACACTTGCCTCCTCATCGATTACTGCCCCGGTGGCGACCTCCACTCCCTCCTTCGCAAGCAGCCCGGAAACCGGCTACCGGTCGACGCGGTCAGGTTCTACGCGGCCGAGGTGCTGGTAGCCCTTGAGTACCTTCACGCCACTGGCGTCGTTTACCGGGATCTGAAGCCGGAAAACGTTTTACTCCGTGAGGATGGCCACATCATGTTGTCAGACTTCGACTTGTGCTTCAAGGCCGATCCGACGGACGCGTTTTCCAGGTCCTGCGTCGGAACCCACGAATACCTGGCGCCGGAGTTGGTCGCTGGCACCGGCCATGGCAACGGCGTTGACTGGTGGGCGTTTGGGGTGTTTATATTTGAGATGTTGCATGGAACGACTCCTTTTAAAGGAGGGAGCAAAGAAGCCACCTTGCGCAATATAGCATCGACCCGGCAAGTTAAGTTCCAAGCCAGAGATGAAGAAGAAAAGGGGGTCGGAATTACAGAAGCAAGAGACTTGATTGAAAGACTATTAGTCAAGGACCCAAGGAAGCGTCTAGGGTTCTCCAGGGGTGCGACGGATATTAAACGGCACCCTTTCTTTAACGGGATAAAATGGCCTCTGATTCGGACGTACACCCCGCCGGAGGTACGAGGAGTTGCGAGGAAGACCAAGGCACACGTGAGTCACGTGACGGGGGTTCCCAGTGAAAGAGGGCATTGGTGGTGGAATTCTAAGAAAAATAAGGGGTCAAAGCACAATTTCACTTTTAATAATAACAACTATTACTCTTATATTAATTATAAAAAGGTTAAGAAATGTGCTTAG 1323 54.35 MDEETFFPSDTDIDFSFTSTTSSVTTATDRTFASSSARTSLARSSLTLSFNESRLSTSTAGATAAANLHHRPHRKSDPHWSAINAATTLSSDGALHLRHLKLLRHLGTGNLGRVFLCRLRDCDAANFALKVVDRDALTNKKLSHVQMEADILSALDHPFLPTLYAHLEVSHYTCLLIDYCPGGDLHSLLRKQPGNRLPVDAVRFYAAEVLVALEYLHATGVVYRDLKPENVLLREDGHIMLSDFDLCFKADPTDAFSRSCVGTHEYLAPELVAGTGHGNGVDWWAFGVFIFEMLHGTTPFKGGSKEATLRNIASTRQVKFQARDEEEKGVGITEARDLIERLLVKDPRKRLGFSRGATDIKRHPFFNGIKWPLIRTYTPPEVRGVARKTKAHVSHVTGVPSERGHWWWNSKKNKGSKHNFTFNNNNYYSYINYKKVKKCA* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 18129429 18130854 - Vvi19g950 Vvi19g950 782449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g950 440 PANTHER FLIPPASE KINASE 1-RELATED 9 251 - -
Vvi19g950 440 PANTHER FLIPPASE KINASE 1-RELATED 248 401 - -
Vvi19g950 440 SUPERFAMILY Protein kinase-like (PK-like) 78 393 IPR011009 -
Vvi19g950 440 Pfam Protein kinase domain 102 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g950 440 SMART serkin_6 100 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g950 440 PANTHER SERINE/THREONINE-PROTEIN KINASE WAG1 9 251 - -
Vvi19g950 440 PANTHER SERINE/THREONINE-PROTEIN KINASE WAG1 248 401 - -
Vvi19g950 440 Gene3D Transferase(Phosphotransferase) domain 1 184 384 - -
Vvi19g950 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Vvi19g950 440 ProSiteProfiles Protein kinase domain profile. 100 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g950 440 Gene3D Phosphorylase Kinase; domain 1 100 388 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76483 PF00069 Pkinase 5.40E-59 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g950 - - vvi:100257743 769.615