Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g956 ATGGTTGGGGATTGTGATGATGATCAATGGATTGACCCACTGCTCATAACCGACGCCTCTTTGCAGCAGCAAGTCTCGCAGTACCCACTCAGCTTCACTGCTTCTGCAATGGCAGATCCACTCGATGTTAATTCGAACATCAAAGAGGATGTTTCTTGTGAAGATCAAAGCTTGGAAACAATTAGCAGTCAGAATTTCAATGACCCACTTGCAGATGGTGTTTTTGATGGTCGGTCAATTTTGGGATTTTCTCTGACATCTCCAGATTTGGTTATCTGCACTGGTTCGCCAGACATCCCCATAAAAAGCCACGGAAATTCCCTTACTTTCTTGAAGAATGAGTTTCAGAAGAATGCGGAATCCTCCATTAATATATCCTTAGAGAAAGGCATCAATGGGTTAGAAATTCAAGGTGCCCATGAGACCCCACCTGGAAAGACTTCAACATTGTGGCAAACCCCGAATGAAGATGTGTTTCTTGAAGCTTCATTTGAGCTTCCTCCACCACCAATGACCCAAGAAAATTTGCTCAAAGATCTTCCGTCTGCTATAAGCATCAATGACGATTGCATGGACAGCCCTGAGGTTCCGAGTGGAGAAACCTTTGATGTCATAAAAAATGATTCTCCCCCAAGCTTAGGAGAAGATGACTCTCTTAAACTTATGGAGTTGCCTCAAAAGACTGAATTTGGATCACTGAAAGGTAGTGATGAGTGTGAGGTGGAAGGAGAATTTCAGAAGTTGCAAAAAGAATATGAGTTCCAAAAGAAGGAACTGACAGAAACAAGGAGAGCTTTAGAGGAGCTTAAGAGGGAGAACAAACTCAAGACTAGAGAATGTCAAGAAGCTTGGAAGTCTTTGCAGGAGCTCCAGAATGAGCTCATGCGAAAATCAATGCACGTTGGGTCTTTGGCTTTTGCCATTGAGGGACAAGTGAAAGAGAAGAGCAAATGGTTCTCGTCCTTGAGGGGCTTGAAAAGAAAGTTGAAGGTTTTGAAATTAGAACACATTAATCTGTCCCAAGAGGTTTCATCATATAAGAAGTGCCTTGCAGATATGAATGAAATGAGCTCTACCATTCAGTCTACAATGAAACAGCAAACAGATTCCTATGAACATCTTAAGGTCAAATTTATTGAAGGGGTTAAGGAACAGAAGGAACTTTACAATAAGGTTTTAGAGTTGAAAGGAAACATAAGGGTGTTTTGCCGATGTAGGCCACTAAACGGTGAAGAAATTGCAGCTGGAGCTTCAATGGCAATTGACTTTGAATCTGCTAAGGACGGCGAGCTTACAGTAAAATCAAATGGGGCACCCAAGAAAACCTTCAAGTTTGATGCTGTTTTTGGTCCCCTGGCAAACCAAGCTGATGTTTTTGAAGACACTGCACCATTTGCAGCCTCAGTTCTAGATGGGTACAATGTCTGTATATTTGCTTATGGGCAGACTGGAACAGGGAAGACTTTCACAATGGAGGGCACTGATGAAGCTCGTGGAGTTAACTTTAGGACTCTTGAAGAGCTGTTTCACATTATCAAGGAGCGGCAGCAGCAATTCCGATATGATATATCTGTTAGTGTCCTAGAAGTTTATAATGAGCAAATACGAGATTTGCTAGTTACAGGAACTCAGCCTGGAGTTGTCACAAGGAGGCTTGAAATAAGGCAAGTGGGTGAAGGAATACATCATGTGCCTGGACTGGTTGAAGCACATGTGAACAACACGAGCGAGGTCTGGGAAGTTCTACAAACTGGCAGTAATGCAAGGGCTGTCAGTTCAACTAATGCTAATGAGCACAGTAGCCGATCCCACTGCATACACTGTGTGATGGTGAAAGGAGAGAATTTGCTGAATGGAGAATGCACAAGAAGCAAGCTATGGCTTGTTGACCTAGCAGGAAGTGAGAGAGTAGCCAAGACTGAAGTACAAGGAGAAAGGCTCAAGGAAACCCAAAACATTAACCGTTCTCTTTCAGCTCTTGGAGATGTCATTTCTTCACTTGCAACTAAAAGTCCACACATCCCCTTCAGGAACTCCAAGCTGACCCACTTACTTCAAGACTCTCTAGGAGGAGACTCCAAGACGCTCATGTTTGTACAGATCAGTCCTAATGAGAATGACTTGAGTGAGACTCTTTGCTCCCTCAATTTTGCAAGTAGAGTGAAAGGAATAGAGTTAGGTCCTGCAAAGAAGCAATTGGACAGTTCTGAACTCATAAGATACAAACAACTGGTTGATAAAACAAAGCTAGATGTAAAGAGCAAAGATGTGCAAATTAAGAAGATGGAGGAAACAATCCATGGTTTAGACCTAAAAGTGAAAGAAAGAGACCTTAAAAACAAAAACCTACAAGACAAGGTAAAAGAATTGGAATCGCAGCTTCTAGTAGAGAGAAAACTGGCACGACAGCATGTGGACACCAAAATAGCTGAGCAGCTGTTACTGCAGCAACAACTGAAACAACAGCAGCAGCAGCAGGAGGAGCAAACTGCTGCACCCATGAGGCCACCACTTGCAAGCCGGCCTTTGGGAAGTTACAAGAATGTGGAAGAAACAAATAACTCAATGTGCAAAGATCCAAAGTCTATAGACTATTATTATAGTTAG 2607 42.62 MVGDCDDDQWIDPLLITDASLQQQVSQYPLSFTASAMADPLDVNSNIKEDVSCEDQSLETISSQNFNDPLADGVFDGRSILGFSLTSPDLVICTGSPDIPIKSHGNSLTFLKNEFQKNAESSINISLEKGINGLEIQGAHETPPGKTSTLWQTPNEDVFLEASFELPPPPMTQENLLKDLPSAISINDDCMDSPEVPSGETFDVIKNDSPPSLGEDDSLKLMELPQKTEFGSLKGSDECEVEGEFQKLQKEYEFQKKELTETRRALEELKRENKLKTRECQEAWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSKWFSSLRGLKRKLKVLKLEHINLSQEVSSYKKCLADMNEMSSTIQSTMKQQTDSYEHLKVKFIEGVKEQKELYNKVLELKGNIRVFCRCRPLNGEEIAAGASMAIDFESAKDGELTVKSNGAPKKTFKFDAVFGPLANQADVFEDTAPFAASVLDGYNVCIFAYGQTGTGKTFTMEGTDEARGVNFRTLEELFHIIKERQQQFRYDISVSVLEVYNEQIRDLLVTGTQPGVVTRRLEIRQVGEGIHHVPGLVEAHVNNTSEVWEVLQTGSNARAVSSTNANEHSSRSHCIHCVMVKGENLLNGECTRSKLWLVDLAGSERVAKTEVQGERLKETQNINRSLSALGDVISSLATKSPHIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVKGIELGPAKKQLDSSELIRYKQLVDKTKLDVKSKDVQIKKMEETIHGLDLKVKERDLKNKNLQDKVKELESQLLVERKLARQHVDTKIAEQLLLQQQLKQQQQQQEEQTAAPMRPPLASRPLGSYKNVEETNNSMCKDPKSIDYYYS* 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 18293839 18303006 + Vvi19g956 Vvi19g956 782455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g956 868 Pfam Kinesin motor domain 404 724 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g956 868 Coils Coil 809 829 - -
Vvi19g956 868 PANTHER KINESIN-LIKE PROTEIN KLP-3 232 852 - -
Vvi19g956 868 CDD KISc_C_terminal 396 726 - -
Vvi19g956 868 ProSitePatterns Kinesin motor domain signature. 624 635 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi19g956 868 Coils Coil 245 279 - -
Vvi19g956 868 Coils Coil 322 342 - -
Vvi19g956 868 SMART kinesin_4 396 732 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g956 868 MobiDBLite consensus disorder prediction 824 868 - -
Vvi19g956 868 Gene3D Kinesin motor domain 341 726 IPR036961 -
Vvi19g956 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 761 IPR027417 -
Vvi19g956 868 ProSiteProfiles Kinesin motor domain profile. 398 724 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g956 868 PRINTS Kinesin heavy chain signature 472 493 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g956 868 PRINTS Kinesin heavy chain signature 594 611 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g956 868 PRINTS Kinesin heavy chain signature 625 643 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g956 868 PRINTS Kinesin heavy chain signature 674 695 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi19g956 868 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 232 852 - -
Vvi19g956 868 Coils Coil 773 800 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g956 K10406 KIFC2_3; kinesin family member C2/C3 - vvi:100261047 1654.42
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g956 . . . . Bpe09g00290 . . Bma13g00898 Cmo16g00505 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0984 . . . . . Blo10g00686 . . . . . . . . . Cma04g00636 Cma16g00466 Car04g00595 Car16g00421 . Cpe01g00574 . . . . . . . Cla07g01010 Cam07g1087 Cec07g1159 Cco07g1137 Clacu07g1061 Cmu07g1052 Cre07g1428 . . Chy07g01045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003005 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 47