Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g959 ATGGCTTCGCTAGCTTCCCTTGTGAGTTTGGGAAGCGCTGGTGCCAGTTCCTCTGGACATTTCGAGGGATCTCTTCTGCTACAACGGAGAGTTTCCCTATCAAGACGCAATTTTGGGGGTGGGAAGAGATGGGGGTTGGTTTCGGTTTGTAAATATTCGGGCACAATGACTAATGTTATTGCTGAGGAAGGGAATGCGGTTTCTGTGGATTCTTCTACGTATAGGGGTGGTGGTAAGGACGAGGATAATGGCCTTGTCCTCAAGCCTGCGCCAAAGCCTGTGTTGAAACCCGTGAATTCTGTAGTTTCTTGGGATGCAGGGTCGAAAATTAGTGGGGACTCTGATGATGATGAGAAGTTGGAGAATGTGGATGAGAGGAATAAGGTGATAGAGTCACTGGGAGAGGTGTTGGAGAAGGCTGAAAAGCTTGAAACTGGCAGGTTGGGTGATAAGAAATCTAAAACCTTAAAGAGTGTGTGGCGGAAAGGAAATCCGGTTGCTACGGTTGAAAAGGTTGTTAAGGATGCTTCTAATAATATTACTAACACTGAAAGAGAGGGACCTGAGGTCGGGAGGAAGGTAGAAACTCAGCCCAGGATTCCTTTGAGACCCACTCAGCCGCCTTTGAGAGCTCAACCAAAGTTGCAAGCTAAACCTTCGCGGAAACCAATCTTGATTGACAAATTTGCTTCCAAGAGACCAGTGGTTGATCCGATGATAGCGCAAGCAATTCCGGATGATGAGACATCAGAACTGAATGTGTCTATTCCTGGGGCGGCTACAGCAAGAAAAGGGAGGAAATGGAGTAAGGCAAGTCGGAAGGCTGCTAGACTTCAAGCAGCTAAAGATGCGGCTCCTGTTAAAGTTGAAATTCTAGAGGTTGGGGAAGAAGGTATGTTGACAGAAGACTTAGCGTACAACTTGGCCATCAGTGAAGGTGAAATTCTTGGTTTTCTATACTCAAAAGGTATTAAGCCAGATGGGGTGCAAACTCTGGACAAAGACATGGTTAAGATGATTTGCAAAGAGTATGAGGTAGAAGTTATTGATGCTGCCGGTGTTAAAGTGGAAGAAATGGCAAGGAAGAAGGAAATTCTTGATGAAGAAGACCTGGACAAACTAGAAAACAGACCTCCTGTCCTGACTATAATGGGTCACGTGGATCATGGCAAGACCACCCTTTTGGATCATATTCGGAAGAGCAAGGTAACTGCATCGGAAGCAGGAGGGATTACACAAGGAATTGGTGCATATAAGGTTTTAGTGCCCATCGATGGCAAGCCACAGTCATGTGTTTTCCTTGATACACCTGGACACGAGGCGTTTGGGGCGATGAGAGCTCGTGGAGCAAGGGTTACCGACATTGCTATTATTGTTGTGGCTGCTGATGATGGAATTCGTCCTCAAACAAATGAGGCCATAGCTCATGCTAAAGCAGCTGGGGTACCAATTGTAATAGCTATAAATAAGATAGATAAGGATGGAGCTAACCCAGAACGAGTCATGCAAGAGCTTTCGTCTATTGGTCTAATGCCAGAAGATTGGGGTGGTGATATCCCAATGGTTCAGATCAGTGCTCTTAAAGGGGAGAATGTAGATGATTTGTTAGAAACTATCATGCTTGTAGCAGAGTTGCAAGAGTTGAAGGCTAATCCTGATAGAAACGCAAAGGGCACAGTCATTGAGGCTGGTCTTGATAAATCGAAGGGACCGGTTGCTACATTCATTGTGCAGAATGGAACGCTCAAAAGGGGAGATATAGTGGTTTGTGGTGGCGCCTTCGGCAAGGTGCGGGCTTTGTTTGATGATGGTGGGAAGCGTGTTGATGCAGCTGGACCTTCTATACCTGTCCAGGTCATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTCGTTGGCTCCCTTGATATTGCTCGAGAAAGAGCGGAGGCACGTGCAGAGTCATTGCGACAAGAACGTATATCATCAAAGGCTGGTGATGGGAAGGTTACACTTTCTTCCTTTGCTTCTGCAGTTTCAGGTGGAAGCCAGTCTGGATTAGACTTGCATCAGTTGAATATTATTATGAAGGTTGATGTTCAGGGTTCCATTGAGGCTGTGAGGCAAGCCTTACAGGTGCTTCCTCAAGATAATGTCGCTTTAAAGTTCCTCCTCCAAGCAACCGGGGATATAAGTGCTAGTGATATTGATCTTGCAGTTGCTAGCAAGGCTATTGTTATAGGATTTAATGTTAGAGCACCTGGCTCTGTTAAGAGTTATGCTGACACCAAAGGGGTAGAGATTCGACTGTACAAAGTTATTTATGATCTTATTGATGATGTGCGGAATGCAATGGAAGGACTCCTGGATGCTGTTGAGGAAGAAATAACAATTGGCACAGCAGAAGTTCGGGCCACATTCACCAGCGGCAGTGGCCGGATTGCTGGTTGCATGGTAAAGGAGGGAAAGGTAGAGAAAGGTTGTGGCATTCGGGTGGTACGAGATGGCAGGGCAGTCTATGTTGGTACTCTTGATTCTTTGAGACGAGTTAAAGAAATTGTGAAAGAGGTAAATGCTGGACTAGAGTGTGGGATGGGAATGGAAGACTACAATGATTGGGAGGTGGGAGACATTGTCCAGGCCTTCAACAAGAAGCAGAAGAAACGAACGCTTGAAGAGGCATCGGCTTCAATGACAGCTGCACTGGAAGTGGCAGGAATTGAAAAATAA 2718 45.84 MASLASLVSLGSAGASSSGHFEGSLLLQRRVSLSRRNFGGGKRWGLVSVCKYSGTMTNVIAEEGNAVSVDSSTYRGGGKDEDNGLVLKPAPKPVLKPVNSVVSWDAGSKISGDSDDDEKLENVDERNKVIESLGEVLEKAEKLETGRLGDKKSKTLKSVWRKGNPVATVEKVVKDASNNITNTEREGPEVGRKVETQPRIPLRPTQPPLRAQPKLQAKPSRKPILIDKFASKRPVVDPMIAQAIPDDETSELNVSIPGAATARKGRKWSKASRKAARLQAAKDAAPVKVEILEVGEEGMLTEDLAYNLAISEGEILGFLYSKGIKPDGVQTLDKDMVKMICKEYEVEVIDAAGVKVEEMARKKEILDEEDLDKLENRPPVLTIMGHVDHGKTTLLDHIRKSKVTASEAGGITQGIGAYKVLVPIDGKPQSCVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGENVDDLLETIMLVAELQELKANPDRNAKGTVIEAGLDKSKGPVATFIVQNGTLKRGDIVVCGGAFGKVRALFDDGGKRVDAAGPSIPVQVIGLNNVPIAGDEFEVVGSLDIARERAEARAESLRQERISSKAGDGKVTLSSFASAVSGGSQSGLDLHQLNIIMKVDVQGSIEAVRQALQVLPQDNVALKFLLQATGDISASDIDLAVASKAIVIGFNVRAPGSVKSYADTKGVEIRLYKVIYDLIDDVRNAMEGLLDAVEEEITIGTAEVRATFTSGSGRIAGCMVKEGKVEKGCGIRVVRDGRAVYVGTLDSLRRVKEIVKEVNAGLECGMGMEDYNDWEVGDIVQAFNKKQKKRTLEEASASMTAALEVAGIEK* 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 18431717 18445331 - Vvi19g959 Vvi19g959 782458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g959 905 MobiDBLite consensus disorder prediction 71 91 - -
Vvi19g959 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 552 IPR027417 -
Vvi19g959 905 ProSitePatterns Initiation factor 2 signature. 838 860 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vvi19g959 905 SUPERFAMILY Translation proteins 790 885 IPR009000 -
Vvi19g959 905 Pfam Translation-initiation factor 2 684 777 IPR023115 -
Vvi19g959 905 PRINTS GTP-binding elongation factor signature 380 393 IPR000795 GO:0003924|GO:0005525
Vvi19g959 905 PRINTS GTP-binding elongation factor signature 432 442 IPR000795 GO:0003924|GO:0005525
Vvi19g959 905 PRINTS GTP-binding elongation factor signature 448 459 IPR000795 GO:0003924|GO:0005525
Vvi19g959 905 PRINTS GTP-binding elongation factor signature 484 493 IPR000795 GO:0003924|GO:0005525
Vvi19g959 905 TIGRFAM small_GTP: small GTP-binding protein domain 379 539 IPR005225 GO:0005525
Vvi19g959 905 Hamap Translation initiation factor IF-2 [infB]. 28 885 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vvi19g959 905 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 28 154 - -
Vvi19g959 905 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 151 222 - -
Vvi19g959 905 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 240 895 - -
Vvi19g959 905 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 151 222 IPR015760 -
Vvi19g959 905 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 28 154 IPR015760 -
Vvi19g959 905 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 240 895 IPR015760 -
Vvi19g959 905 TIGRFAM IF-2: translation initiation factor IF-2 299 887 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vvi19g959 905 CDD IF2_eIF5B 379 545 - -
Vvi19g959 905 SUPERFAMILY Translation proteins 552 635 IPR009000 -
Vvi19g959 905 Pfam Translation initiation factor IF-2, N-terminal region 303 346 IPR006847 -
Vvi19g959 905 Gene3D Translation factors 789 886 - -
Vvi19g959 905 Gene3D - 684 788 IPR036925 -
Vvi19g959 905 CDD IF2_mtIF2_II 556 640 IPR044145 -
Vvi19g959 905 Gene3D Translation factors 552 667 - -
Vvi19g959 905 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 683 795 IPR036925 -
Vvi19g959 905 Coils Coil 166 186 - -
Vvi19g959 905 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 376 549 IPR000795 GO:0003924|GO:0005525
Vvi19g959 905 CDD mtIF2_IVc 795 877 - -
Vvi19g959 905 Gene3D - 373 551 IPR027417 -
Vvi19g959 905 Coils Coil 635 655 - -
Vvi19g959 905 Pfam Elongation factor Tu GTP binding domain 381 541 IPR000795 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g959 K02519 infB, MTIF2; translation initiation factor IF-2 - vvi:100252450 1622.83
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g959 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01584 Cam11g1651 Cec11g1679 Cco11g1676 Clacu11g1808 Cmu11g1622 Cre11g2038 . . . . Lsi04g01862 . . Cme07g00769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00885 Cme01g01542
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004219 3 2 2 2 2 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 5 1 41