Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g96 ATGTCTGTCTCACTTCCCGTCACTCCTATTCCAACCACGCCAGGGGTAGATCATCAGGGGGTGGCTCGCTCCACAGCGAATTTTCCTCCTAACATTTGGGGTGATCGTTTCCTCATCTACACTCCTGATGATGCTATAACCCATGAATGTAAAGAACAGCAAATTGAAGAACTGAAAGAAGAAGTGAGAAAGGAGCTAAAAGCCAGTGCCAGTAAATCTCCGGAACTGCTGAAGTTGATAGATTCCATCCAACTCTTGGGATTGGCACACCACTTTGAAAGGGAGATCGAAGAAGCATTAAAAGACATGTATGGAACATATAGTCTGGTTGATGATAACGACGACTTCACAAATGCTTCGCTTCGGTTCCGACTACTAAGACAAGAAGGTTACCCCATTCCATCTGATGTATTTAATAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATATTTGATTGGTGACTCACTTGGCATGCTAGCTTTATATGAAGCTACACATTTGATGGTGCATGGAGAAGACATACTAGAGGAAGCCCTGGCTTTCACCACTACTCATCTTCAGTCCATGGCAACTGATCCAAATAATCCTCTTGCAAAACAAGTGATTCGTGCACTAAAGCGGCCCATTCGCAAGGGCTTGACAAGGGTGGAGGCAACGCATTACATTTCCATCTACCAACAAGATGGTTCACATAATAAATCTTTACTCAAGCTTGCAAAGTTGGACTTCAACCTGTTGCAGTCACTCCATAGGAAAGAGCTAAGTGAGATCAGTAGGTGGTGGAAAGGTTTAGACGTTGCGACAAAGCTACCTTTTGCACGGGATAGACTAGTGGAGAGCTACTTTTGGACATTGGGAGTGTACTTTGAGCCCCAGTACTTCCCTGCTCGAAGGTTCTTAACGAAAATGACCGCTATGTTAACCATTATGGATGATATATATGATGCATATGGTACAATCGAAGAACTTGAACTCCTTACAGAAGCAGTCGAAAGATGGGATGCCAGCTGCATAGATCAACTGCCTGCAGATTATATGAAGTGGTTTTATCGGGCACTCTTGGATGTTTATGAAGAAATGGAAGAAGAGATGGCCAAGGAAGGGAAATTGTACCGTGTCCACTATGCAAAAGAAGCGATGAAAAGGCAAATCCAAGCCTACTTTATTGAAGCCAAATGGTTGAACCAACGATATGTACCAACATTCGATGAGTACATAAGTAATACACTAGTAAGTTGTGGTTACACTTTGCTCATTGCCACATCTTTCGTTGGCATGGGAGATGTAGTGACAGAGGAGGCCTTCCAATGGGTGCTCAGCCACGCCAAGATGATTAGAGCTTCAGAAACCATCAGCAGGCTCATGGATGACTTAGTTTCCCACGAGTTCGAACAAACAAGAATGCATGCCCCCTCAAGCATTGAGTGTTACATGAAGCAATATGAGGTTACAAAGCAGGAGGCTTGTGATGAGTTGAATAAGCAAATAGTCAGGGCATGGAAGGATATCAACCAGGAGTGCCTCAGACCTACACAAGTGCCAATGCCACTCGTCACACGTGTTCTAAATTTTAGCCGTGTGATAGATATCTTGTACAAGGATGAAGATGAGTACACCCACAATGGAAAATTGATAAAAGATCTCATTACATGGATGCTCATAGACCCTGTGCCAATGTAA 1683 43.49 MSVSLPVTPIPTTPGVDHQGVARSTANFPPNIWGDRFLIYTPDDAITHECKEQQIEELKEEVRKELKASASKSPELLKLIDSIQLLGLAHHFEREIEEALKDMYGTYSLVDDNDDFTNASLRFRLLRQEGYPIPSDVFNKFKDKEGNFKEYLIGDSLGMLALYEATHLMVHGEDILEEALAFTTTHLQSMATDPNNPLAKQVIRALKRPIRKGLTRVEATHYISIYQQDGSHNKSLLKLAKLDFNLLQSLHRKELSEISRWWKGLDVATKLPFARDRLVESYFWTLGVYFEPQYFPARRFLTKMTAMLTIMDDIYDAYGTIEELELLTEAVERWDASCIDQLPADYMKWFYRALLDVYEEMEEEMAKEGKLYRVHYAKEAMKRQIQAYFIEAKWLNQRYVPTFDEYISNTLVSCGYTLLIATSFVGMGDVVTEEAFQWVLSHAKMIRASETISRLMDDLVSHEFEQTRMHAPSSIECYMKQYEVTKQEACDELNKQIVRAWKDINQECLRPTQVPMPLVTRVLNFSRVIDILYKDEDEYTHNGKLIKDLITWMLIDPVPM* 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1126916 1130047 - Vvi19g96 Vvi19g96 781595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g96 560 CDD Terpene_cyclase_plant_C1 23 557 IPR044814 GO:0010333|GO:0016102
Vvi19g96 560 SUPERFAMILY Terpenoid synthases 232 560 IPR008949 -
Vvi19g96 560 Pfam Terpene synthase, N-terminal domain 32 206 IPR001906 GO:0010333|GO:0016829
Vvi19g96 560 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 232 IPR008930 -
Vvi19g96 560 Pfam Terpene synthase family, metal binding domain 237 503 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g96 560 SFLD Isoprenoid Synthase Type I 232 558 - -
Vvi19g96 560 PANTHER OS04G0344100 PROTEIN-RELATED 21 544 - -
Vvi19g96 560 PANTHER TERPENE SYNTHASE 2-RELATED 21 544 - -
Vvi19g96 560 Gene3D - 71 232 IPR036965 GO:0010333|GO:0016829
Vvi19g96 560 SFLD Terpene Cyclase Like 1 C Terminal Domain 232 558 IPR034741 -
Vvi19g96 560 Gene3D Farnesyl Diphosphate Synthase 30 548 IPR008949 -
Vvi19g96 560 Coils Coil 48 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g96 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] - vvi:100243606 1116.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g96 . . Bda07g00331 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337