Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g965 ATGGCAGCCTCAGTGATGAGCTCATTGAGCTTGAAACCATCTCCTTTCAGTGTTGAGAGGAGAGCAGTCAGAGGCCTGCCTTCTCTTGCCAGAAGCTCCTCTTCTTTCAGGGTTGAGGCCAGTGGTGGCAAGAAGATCAAAACTGACAAGCCTTATGGAATTGGAGGTGGCATGAAATTGTCTGATGGACTTGACGCATCTGGCAGAAAGGGCAAGGGAAAGGGAGTCTACCAATTCGTCGATAAATACGGTGCCAACGTGGATGGATACAGTCCAATCTACAGTCCTGACGAATGGTCTCCAGGTGGTGATGTGTATGTTGGTGGTACCACAGGATTATTGATTTGGGCAGTGACCCTAGCAGGGCTTCTACTTGGGGGTGCTCTTCTTGTGTACAACACAAGTGCTTTGGCACAGTAG 420 49.52 MAASVMSSLSLKPSPFSVERRAVRGLPSLARSSSSFRVEASGGKKIKTDKPYGIGGGMKLSDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYSPDEWSPGGDVYVGGTTGLLIWAVTLAGLLLGGALLVYNTSALAQ* 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 18708698 18709996 + Vvi19g965 Vvi19g965 782464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g965 139 Pfam Photosystem II 10 kDa polypeptide PsbR 41 138 IPR006814 GO:0009523|GO:0009654|GO:0015979|GO:0042651
Vvi19g965 139 PANTHER OS07G0147550 PROTEIN 1 139 - -
Vvi19g965 139 PANTHER PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC 1 139 IPR006814 GO:0009523|GO:0009654|GO:0015979|GO:0042651
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g965 K03541 psbR; photosystem II 10kDa protein - vvi:100243967 264.233
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g965 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01586 Cam11g1653 Cec11g1681 Cco11g1678 Clacu11g1810 Cmu11g1624 Cre11g2040 Cone6ag0288 Cone9ag0323 . . . . . . Blo07g01000 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004437 0 2 1 0 1 1 1 1 1 1 2 2 1 1 1 1 2 2 1 2 1 1 2 2 2 2 1 3 1 1 40