Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g966 ATGGGCGCTAAAAGGCAGCAAATGAGACTCCGCTGTGAGTTCGAAGTCAAAGTGAATGGCGCTCTCTCCTCCGACCCCGACCCCCGATTCCTCGACCGGCAAAAGGCGCTGGAAGCTGCAATGAATGATATCAATAGTTCATTTGGGAAAGGTAGTGTTACGAGATTGGGGAGTGCTGGTGGAGCTCTCGTTGAAACTTTTCCCAGTGGCTGTTTGACTTTGGACTTCGCCCTTGGTGGTGGCCTTCCCAAAGGGAGAATTGTGGAGATATATGGACCAGAAAGTAGTGGAAAGACTACCCTAGCACTCCATGCTATTGCAGAAGTGCAGAAGCTGGGAGGCAATGCCATGCTTGTTGATGCTGAGCATGCTTTTGATCCAGCATACTCCAAAGCATTGGGAGTCGATGTTGAAAATTTAATTGTCTGCCAACCTGATCATGGGGAGATGGCACTGGAGATTGCAGACCGTATGTGCAGATCTGGTGCTATAGATCTTATTTGTGTTGATTCTGTCTCAGCTCTCACACCACGTGCTGAGATTGAAGGTGAAATTGGGATGCAGCAAATGGGTTTGCAGGCACGTCTTATGAGCCAAGCTTTGCGTAAAATGTCAGGAAATGCTTCCAAAGCTGGATGTACTCTTATTTTCTTGAATCAAATAAGATATAAGATTGGTGTGTATTACGGCAATCCTGAAGTCACCAGTGGTGGTATTGCTTTAAAGTTCTTTGCTTCACTGCGCCTGGAGATACGTCCTATAGGAAAAATAAAGTCTAGTAAAGGTGATGAAGACATTGGGCTACGAGTTCGTGTGAGAGTGCAAAAGAGTAAGGTTTCCAGGCCATACAAGCAAGCTGAATTTGAAATAATATTTGGAGAGGGAGTGAGTAAACTGGGTTGCATTTTGGATTGTGCTGAACTGATGGATGTTGTGGTAAAGAAGGGCTCTTGGTATAGCTATGGGGACAATAGGTTGGGACAAGGAAGAGACAGAGCATTACAGTACTTGAGAGAGAACCCTCTTGTTTGCCATGAAATCGAAAAGATAGTTCGACCCATGATGGCTGAGGGAATTGGACAATTAGGCGCTCCACATGTGAGGCTCTCGCCGACATCGCCTGAAGATGAAGATATTCTTGAGGAGATCAGGTAA 1155 45.89 MGAKRQQMRLRCEFEVKVNGALSSDPDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKIKSSKGDEDIGLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAELMDVVVKKGSWYSYGDNRLGQGRDRALQYLRENPLVCHEIEKIVRPMMAEGIGQLGAPHVRLSPTSPEDEDILEEIR* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 18712457 18722886 - Vvi19g966 Vvi19g966 782465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g966 384 PANTHER MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG 30 363 - -
Vvi19g966 384 ProSitePatterns recA signature. 240 248 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vvi19g966 384 PRINTS RecA protein signature 120 149 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g966 384 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g966 384 PRINTS RecA protein signature 192 221 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g966 384 PRINTS RecA protein signature 237 265 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g966 384 PRINTS RecA protein signature 272 301 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g966 384 PRINTS RecA protein signature 326 343 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g966 384 Hamap Protein RecA [recA]. 33 358 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g966 384 SMART AAA_5 84 255 IPR003593 -
Vvi19g966 384 TIGRFAM tigrfam_recA: protein RecA 32 352 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g966 384 PANTHER RECA 30 363 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g966 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 296 IPR027417 -
Vvi19g966 384 SUPERFAMILY RecA protein, C-terminal domain 297 354 IPR023400 -
Vvi19g966 384 CDD recA 32 352 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g966 384 MobiDBLite consensus disorder prediction 365 384 - -
Vvi19g966 384 Pfam recA bacterial DNA recombination protein 35 297 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vvi19g966 384 Gene3D - 62 356 IPR027417 -
Vvi19g966 384 ProSiteProfiles RecA family profile 1. 63 221 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vvi19g966 384 ProSiteProfiles RecA family profile 2. 226 301 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g966 K03553 recA; recombination protein RecA - vvi:100249133 753.436
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g966 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01587 Cam11g1654 Cec11g1682 Cco11g1679 Clacu11g1811 Cmu11g1625 Cre11g2041 Cone6ag0287 Cone9ag0322 . . Lsi04g01865 . . Cme07g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009642 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 2 1 1 2 1 1 31