Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g969 ATGGGAGGTGGCAGCTCCAGCAAGTACAGTTGCGGCAGTGCTTCTGAAACCCTAGAATGGATACACGCTATTCACCAATTTCTCACTCCATATTCTTTCCTAATCAATGCTCACGTAGTCAATTTCTTCAATGATCGACTATGGGAAGCTATCGATGAAGATTGGATTGATTGCCTCAAGAATGAGCCTGTGGACCATCTTCTCCAAATCCCATCTGGAATATTCCAGGATCACTGGCCTCCTTCGCTTCAGCAATTTGTCATTGCTTTAAGCTCCCTTGTGCTTCCTCGACATCAGGCAGGGTTGGAGTCGATATTGCCCAACATGGGCATGACTTCACTTGATAGTGTTCTTACTCAGGGCATGAATATGAAGAAAAAACATGAGGTAGAGGTTCTTTCTGCTGTTGTCGATTCAATTGCAAACAGTGTGGGAGCTGATACAATAGTAGATGTTGGTGCTGGTCAGGGCTATCTTGCACAAGTACTTTCCTTTCAATATCAGCTCTCTGTGGTTGCAATTGATTCTTGTTCTCATCATGGAAATGTTACAAATGCACGTGCAGAACGAATCAAGAAGCACTATGCAGCTCAGATGCGTAAATCTGGGTCAGGGAGTAGGAGTTTGAATGTGCCAAAGACTGTAACATGCCGTGTAATGTCTGCTGACATGTTGAAAGCCGTGAATGACATGTTACTGTCTGAAGATGATGTTCAGTGTCCACAGCAGATTGGACAAAGCATAAGCCAACCTTCTCATCCAGGACTAGATAAGAGAAGATTGCCATCTTTGTGTGATGTACATAATGAGTCTTCATTTGTTCTTGCTGGACTTCACGCATGTGGAGACCTTTCAGTAACAATGCTTAGGACATTTTTGGAGTGCAAAGAAGTTAAAGCAGTGGTTAGCATTGGTTGTTGTTACAACTTACTATCTGAAGAAGTATGTGAGAGTTCTTCTTCCCAATGTGGTTTTCCAATGAGTAATGTTATTAAATCTGCTGGCTTATCACTTGGAAAAAGTTCACGCGACCTTGCTTGTCAGAGTGCAGAGAGATGGAGAGTCATGGGAAAGGATGCTGGTCTTCAAAATTTTGAGTTGCATGCTTTCCGGGCTGCCTTCCAGATGGTTCTCTATAGGTATTATCCAGAAGTTTTGATTACAAGCCCTGCTATAGGGCGTCAAGGGAAAGCTTTGCGCCGCCAACAGCAAAGGAGGAATTTGGAGTCTTCTCTGCAACCTGAAAAAGATGACAAAGCAGCTTTTGCAATGGAGAAAGATTCCTTATTTCAAGGGATTTCTTCTGATGAGACTACCATATCTGACGCAATTAATTCTGTTGATAAGTATTCCCTCTTTGAGAAATTTTGCAAGTCTGGGTTGTGCCGCCTTGGTCTCAAACCTTTGCCAGATGTGAATTTTAAAGAGGTGTGGGAGGAAGCTGCACCATTTGCTGAATTTATTGGACCTTATTGGTCTCTTCGTGCTGCTTTAGGACCTCTTTTGGAAACACTTATTCTGCTTGATAGATTATTGTTCCTCCAAGAGCAAGGCAGTTCAGTGGAGGCAGTCATGTTGCCTATTTTTGATCCTGTATTATCCCCAAGGAATGTCGCCATAATTGCAAAGAAAAGAAATTGA 1641 42.72 MGGGSSSKYSCGSASETLEWIHAIHQFLTPYSFLINAHVVNFFNDRLWEAIDEDWIDCLKNEPVDHLLQIPSGIFQDHWPPSLQQFVIALSSLVLPRHQAGLESILPNMGMTSLDSVLTQGMNMKKKHEVEVLSAVVDSIANSVGADTIVDVGAGQGYLAQVLSFQYQLSVVAIDSCSHHGNVTNARAERIKKHYAAQMRKSGSGSRSLNVPKTVTCRVMSADMLKAVNDMLLSEDDVQCPQQIGQSISQPSHPGLDKRRLPSLCDVHNESSFVLAGLHACGDLSVTMLRTFLECKEVKAVVSIGCCYNLLSEEVCESSSSQCGFPMSNVIKSAGLSLGKSSRDLACQSAERWRVMGKDAGLQNFELHAFRAAFQMVLYRYYPEVLITSPAIGRQGKALRRQQQRRNLESSLQPEKDDKAAFAMEKDSLFQGISSDETTISDAINSVDKYSLFEKFCKSGLCRLGLKPLPDVNFKEVWEEAAPFAEFIGPYWSLRAALGPLLETLILLDRLLFLQEQGSSVEAVMLPIFDPVLSPRNVAIIAKKRN* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 18803651 18822202 - Vvi19g969 Vvi19g969 782468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g969 546 Pfam Methyltransferase domain 125 314 IPR025714 -
Vvi19g969 546 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 4 544 - -
Vvi19g969 546 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 185 IPR029063 -
Vvi19g969 546 PANTHER CGI-41 METHYLTRANSFERASE 4 544 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g969 - - - vvi:100262853 1045.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g969 . . . . . . . . . . . Cma09g00747 . Car09g00655 . . . . . . . . . . Cla11g01589 Cam11g1656 Cec11g1684 Cco11g1681 Clacu11g1813 Cmu11g1627 Cre11g2043 Cone6ag0286 Cone9ag0321 . . Lsi04g01868 . . Cme07g00762 . . . . . . . . . . Cmo09g00739 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003084 1 15 1 1 1 0 2 0 0 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 46