Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g974 ATGACTGAAAGTTTGCCTGGTTGTGATGGAATTTACTTTAAAGGTATCATTTGTTCCTTTAATGGTTTGATCTGCTGCGTTAATTACTGCAACGCCTTTCTGCACGACATACGTATCTGCAACCCCGCTACTGGAGAAGTCCTATTACTCCCACAAAGCCGGGAATTAGAACATCCAGGCGAGGTTGGTGTTGCTTTTGGCCCTGGAATCAATGAATATAAAGTATTTCAGTTTTATGGGGGAACGCAACATTATGGATGTGAGGTATATTCTTCAATCACTGGATCTTGGAAATCCATAGGCAGGGTTGCACACACTCCTTATTCTTCTTTTTCTTCCAATCATGTATGCATTAATGGAATAGTGTACTGGTTCACCCGATCAGAAGAAGGCAGCGGCTCCATCCTTGTAGTTAATAGAGAGGAAATTTTTAGCACAATTCGGCTTCCAAAGGAGAAAATTCTACGTCCTTACTTGATCAATCTCGAAGGTTGTTTGTGTCTAGTGGTTGACAATGGACTTGAGGAATATAGATTTGATATATGGGCTTTGCAAGATAGCAAGGAGTCCCTTTGGACCAAGAAATGGAGTGATTATATGCCCTTTTGTAGCATTGCAGATATCATTAACCATGTAGTCGTGCGAAAAAATGAAATTCTTTTAGGAACTATAACTCATTTTTTTCTTTATAATATGGGGACCAGGACTTGGAGAAAATTCAACTGGGAACATGATGGTGAAGAAATAGTGATTTGTCTTTCGGTGCCATACACAGAGAGCCTCCTCCCTTGTAAGTAA 798 40.1 MTESLPGCDGIYFKGIICSFNGLICCVNYCNAFLHDIRICNPATGEVLLLPQSRELEHPGEVGVAFGPGINEYKVFQFYGGTQHYGCEVYSSITGSWKSIGRVAHTPYSSFSSNHVCINGIVYWFTRSEEGSGSILVVNREEIFSTIRLPKEKILRPYLINLEGCLCLVVDNGLEEYRFDIWALQDSKESLWTKKWSDYMPFCSIADIINHVVVRKNEILLGTITHFFLYNMGTRTWRKFNWEHDGEEIVICLSVPYTESLLPCK* 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 19011211 19012009 - Vvi19g974 Vvi19g974 782473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g974 265 Pfam F-box associated domain 116 197 IPR013187 -
Vvi19g974 265 SUPERFAMILY Galactose oxidase, central domain 24 244 IPR011043 -
Vvi19g974 265 PANTHER F-BOX FAMILY PROTEIN-LIKE PROTEIN 13 265 - -
Vvi19g974 265 PANTHER OS09G0372900 PROTEIN-RELATED 13 265 - -
Vvi19g974 265 TIGRFAM F_box_assoc_1: F-box protein interaction domain 19 197 IPR017451 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g974 - - - vvi:104877768 565.844
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .