Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g98 ATGGCTGGCTACAGAGCTGAAGATGACTATGACTACCTCTTCAAGGTTTCCAAGTCCACTATTGGTGTAGAGTTCGCTACCAGGACCTTGAACGTCGATGGCAAGGTCATCAAGGCTCAGATTTGGGACACTGCGGGTCAAGAAAGGTACCGAGCCATCACCAGTGCTTACTACCGAGGAGCTGTAGGTGCACTCCTTGTATACGATGTCACCCGACATGCAACCTTTGAGAATGTTGACAGATGGCTGAAGGAATTGAGGAATCACACTGACCCCAACATCGTTACATATGCAGAGAGGGAGTCACTCTACTTCATGGAGACTTCTGCACTGGAAGCGACCAATGTAGAGAATGCATTTGCAGAGGTTCTGACCCAGATATACCGCATTGTGAGCAAGAAGTCGGTGGAAGGAGGAGATGAAGGAGCCGCTTCATCTGTACCTGCCAAAGGGGAGAGAATAAATGTGAAAGATGACGCGTCTGCTCTGAAAAGAGTGGGGTGTTGCTCAGGGTAA 516 49.22 MAGYRAEDDYDYLFKVSKSTIGVEFATRTLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDPNIVTYAERESLYFMETSALEATNVENAFAEVLTQIYRIVSKKSVEGGDEGAASSVPAKGERINVKDDASALKRVGCCSG* 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1293570 1301426 + Vvi19g98 Vvi19g98 781597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g98 171 Gene3D - 7 154 IPR027417 -
Vvi19g98 171 TIGRFAM small_GTP: small GTP-binding protein domain 15 94 IPR005225 GO:0005525
Vvi19g98 171 Pfam Ras family 15 94 IPR001806 GO:0003924|GO:0005525
Vvi19g98 171 SMART rho_sub_3 13 126 IPR001806 GO:0003924|GO:0005525
Vvi19g98 171 PANTHER RAS-RELATED PROTEIN RABA1B 17 95 - -
Vvi19g98 171 PANTHER RAS-RELATED PROTEIN RABA1B 96 170 - -
Vvi19g98 171 PANTHER DRAB5-RELATED 17 95 - -
Vvi19g98 171 PANTHER DRAB5-RELATED 96 170 - -
Vvi19g98 171 PRINTS Transforming protein P21 ras signature 12 28 - -
Vvi19g98 171 PRINTS Transforming protein P21 ras signature 30 52 - -
Vvi19g98 171 SMART rab_sub_5 14 130 - -
Vvi19g98 171 ProSiteProfiles small GTPase Rab1 family profile. 1 169 - -
Vvi19g98 171 SMART ras_sub_4 15 130 - -
Vvi19g98 171 ProSiteProfiles small GTPase Ras family profile. 1 171 IPR001806 GO:0003924|GO:0005525
Vvi19g98 171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 133 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g98 K07904 RAB11A; Ras-related protein Rab-11A - vvi:100265921 315.079
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g247 Vvi19g98 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g98 Blo03g00702 Blo03g01562 . Bda09g00544 . Bpe08g00992 . . Cmo16g00469 Cmo04g00717 . . . Car09g00748 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00443 . . Bma14g00271 . . Cmo09g00827 Cma04g00671 Cma16g00434 . . Cpe14g00367 Cpe01g00605 . . . . . . . . . . . . . . . Csa04g00810 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000143 10 6 8 7 9 5 11 6 5 6 6 5 10 6 6 12 5 7 12 6 6 7 5 6 6 7 4 11 6 3 209