Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g980 ATGCCCTGGTTCTCTTGCTTTGGTAGGAGGGCCAGTTCACCAGCTGGTGAAACTGATAAAGTTGATGAAGAGGTTTCTGGTATACACAATGTTCGGCTTTACATGTACAAAGAATTAAAGAATGCTACTGACGATTTTAGTCCAGCCAATAAAATTGGGGAGGGTGGTTTTGGTTCTGTCTATAAGGGAAGGCTTAAAGATGGAACGATTGCTGCTATAAAGGTTCTTGCAGCTGAATCTAAACAAGGGGTGCGGGAGTTCCTGACAGAGATTAATGTAATCTCAAATATAGAGCATGAATACTTAGTTAAGCTTTATGGCTGTTGTGTGGAAGCAAATCATAGAATTTTGGTCTACAACTTCCTCGAGAATAATAGCCTAGCACAAACTCTTCTTGGTGGAGGGTACAGTGGCATGCAGTTTAGTTGGCGAACACGATCTAGAATTTGTATTGGGGTTGCACGTGGGCTTGCCTTTCTTCATGAGGAAGTGCGACCATATATTGTTCACAGGGATATCAAAGCAAGTAATATCCTCCTTGATGGAAATCTAAATCCCAAGATTGCAGATTTTGGTCTTGCAAAGCTTATCCCGTCCAATATGACTCATGTTAGCACACGTGTGGCAGGAACAATAGGTTATTTGGCACCGGAGTATGCTATAAGAGGGCAGTTGACACGGAAAGCTGATATTTACAGTTTTGGTGTTCTCCTTGTGGAAATAGTCTGTGGGAGATGCAACACAAATACACGATTACCTATTGGAGAACAATATCTTCTTGAAAGGACCTGGGAACTTTATGAGCGAAAGGAGCTGGTAGGGCTGGTAGATGAGTCATTGAATGGGGCTTTTGATGCAGAGGAAGCCTGCAGATTCCTAAAGATTGGTCTTCTCTGTACCCAGGACACTCCAAAGCTCCGGCCATCCATGTCAAGTGTAGTGAAGATGCTAATTGGTGAAATGGATGTTGATTCCAGAGCGATTACGAAGCCTGGCCTAATCTCTGATTTCATGGACCTCAAAATCAGAAGTGAACCCAAACCTGTCCCTGATGCGAAGAACGTATCTGATAATTTATCATCTGGCTCGGATATCCAAGACAGTTCAACTATGTCATCAGGAATCACCTTCACTGCAGTATATGACCGGAGCATTTGA 1158 43.01 MPWFSCFGRRASSPAGETDKVDEEVSGIHNVRLYMYKELKNATDDFSPANKIGEGGFGSVYKGRLKDGTIAAIKVLAAESKQGVREFLTEINVISNIEHEYLVKLYGCCVEANHRILVYNFLENNSLAQTLLGGGYSGMQFSWRTRSRICIGVARGLAFLHEEVRPYIVHRDIKASNILLDGNLNPKIADFGLAKLIPSNMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVCGRCNTNTRLPIGEQYLLERTWELYERKELVGLVDESLNGAFDAEEACRFLKIGLLCTQDTPKLRPSMSSVVKMLIGEMDVDSRAITKPGLISDFMDLKIRSEPKPVPDAKNVSDNLSSGSDIQDSSTMSSGITFTAVYDRSI* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 19137066 19142116 + Vvi19g980 Vvi19g980 782479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g980 385 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Vvi19g980 385 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g980 385 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 3 374 - -
Vvi19g980 385 Pfam Protein kinase domain 49 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g980 385 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
Vvi19g980 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vvi19g980 385 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g980 385 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 374 - -
Vvi19g980 385 MobiDBLite consensus disorder prediction 348 367 - -
Vvi19g980 385 CDD STKc_IRAK 52 317 - -
Vvi19g980 385 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Vvi19g980 385 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76484 PF00069 Pkinase 2.30E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g980 - - vvi:100259465 769.229