Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g99 ATGAGAGAAGAAGAGATAGAAAAGCTGAGAGGAGTGGTGAGGGATTGCTTGAGCAAGCATCTCTACTCCTCTGCCATATTTTTTGCGGATAAAGTGGCTGCCTTCACTTCCGATCCAGCTGACATCTACATGCAGGCGCAGGCTCTCTTCCTCGGCCGCCACTACCGCCGCGCCTTCCACCTCCTCAACGCCTCCCAGATCGTCCTCCGCGATCTCCGCTTCCGCTACCTCGCCGCCAAATGCCTTGAGGAACAAAAGGAGTGGGATCAATGTCTGTTAATGCTTGGCGATGCTAAAGTGGATGAACATGGAAATGTTAACGACACAAAGGATTGCAATGTCATGTACTTAGATAAAGAAGGGGAAGATCGTGAAATCAATATCTCTTCAGCAATATGCTTTCTACGAGGCAAGGCATATGAAGCTTTGGAAAATCGTGCCCAGGCTCGACTTTGGTATAAAGCTGCTATCAAAGCGGATCCTTTGTGTTATGAGGCTTTGGAATGCCTTATTGAAAATCACATGCTTACGAGTGAGGAAGAAGCAAGTTTACTTTCATCTTTGCAATTTGCTCCTGAAGATGGATGGCTCTCCTCATTCTATTCATGTTTGATAAAGAAGTATGACAAAGAAACTGTGGTAGAAGCCAAATTTACAGAACTTGAAAAACAAAGTTGTAACATTAATCCTTCGGACCCATCCTTCATTTGCACACTGAAAAACAATACAGATCTTCTAGCCTGCAAAGCTGAATACTATCATCAATGCGGCGAATACCAAAAATGTTTTGAACTAACTGCTATATTGCTTGAAAAAGATCCATTCCATATGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGCAATTTAGTGAAAGATTATCCTCAAAAGGCACTTTCATGGTTTGCTGTTGGTTGCTACTACTATTGTATCAAGAAGTATGACCAGTCACGCCGTTATTTCAGCAAGGCTGCAAATCTAGATGGAACATTTCCTCCTGCTTTGATAGGTTGCGGAAATGCTTATGCTGCTCAAGAAGAGGGTGACCAAGCAATGTTGGCCTATCGAACTGCTGCTCGCTTGTTTCCTGGGTGCCATTTACCCACTCTGTATATTGGGATGGAATACATGCGAACCCATAGCTTTAAGCTCGCTGAGCAGTTTTTCATGCAGGCAAAAACTATTTGCCCCTCAGACCCTCTTGTATATAATGAACTTGGAGTTGTTGCCTATGATATGAAAGAGTACAATAAAGCTGTGTGGTGGTTCCAGAAAACGTTGAGTCACATTCCTTCCTCTTTAAGTGAAATGTGGGAACCGACCATCGTAAATCTGGCTCATGCATATAGAAAGTTAAAGATGTATCATGAAGCAATCTCATTCTATGAGAAAGCCCTCACATTATCGACCAGAAGTTTGAGCACTTATGCTGGCCTTGCATACACTTACCACTTGCAGGATAATTTTCCTGCAGCCATTACATACTACCACAAGGCTTTGTGGCTGAAACCAGATGACCAGTTCTGCACAGAAATGTTGACTCTGGCTCTTGTAGACGAAGCTCGTCGAGGCCTAGACCCAAGAAACGAATCCCGTTAA 1638 43.35 MREEEIEKLRGVVRDCLSKHLYSSAIFFADKVAAFTSDPADIYMQAQALFLGRHYRRAFHLLNASQIVLRDLRFRYLAAKCLEEQKEWDQCLLMLGDAKVDEHGNVNDTKDCNVMYLDKEGEDREINISSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTSEEEASLLSSLQFAPEDGWLSSFYSCLIKKYDKETVVEAKFTELEKQSCNINPSDPSFICTLKNNTDLLACKAEYYHQCGEYQKCFELTAILLEKDPFHMKCTLVHLAAAMELGHSNELYLMACNLVKDYPQKALSWFAVGCYYYCIKKYDQSRRYFSKAANLDGTFPPALIGCGNAYAAQEEGDQAMLAYRTAARLFPGCHLPTLYIGMEYMRTHSFKLAEQFFMQAKTICPSDPLVYNELGVVAYDMKEYNKAVWWFQKTLSHIPSSLSEMWEPTIVNLAHAYRKLKMYHEAISFYEKALTLSTRSLSTYAGLAYTYHLQDNFPAAITYYHKALWLKPDDQFCTEMLTLALVDEARRGLDPRNESR* 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1302567 1319687 + Vvi19g99 Vvi19g99 781598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g99 545 PANTHER CELL DIVISION CYCLE 16,23,27 6 535 - -
Vvi19g99 545 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Vvi19g99 545 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Vvi19g99 545 Pfam Tetratricopeptide repeat 132 161 IPR019734 GO:0005515
Vvi19g99 545 SMART tpr_5 452 485 IPR019734 GO:0005515
Vvi19g99 545 SMART tpr_5 130 163 IPR019734 GO:0005515
Vvi19g99 545 SMART tpr_5 486 519 IPR019734 GO:0005515
Vvi19g99 545 SMART tpr_5 345 378 IPR019734 GO:0005515
Vvi19g99 545 SMART tpr_5 243 276 IPR019734 GO:0005515
Vvi19g99 545 SMART tpr_5 379 412 IPR019734 GO:0005515
Vvi19g99 545 SMART tpr_5 413 446 IPR019734 GO:0005515
Vvi19g99 545 SMART tpr_5 311 344 IPR019734 GO:0005515
Vvi19g99 545 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Vvi19g99 545 PANTHER CELL DIVISION CYCLE PROTEIN 16 HOMOLOG 6 535 - -
Vvi19g99 545 Gene3D Tetratricopeptide repeat domain 5 532 IPR011990 GO:0005515
Vvi19g99 545 SUPERFAMILY TPR-like 39 177 IPR011990 GO:0005515
Vvi19g99 545 SUPERFAMILY TPR-like 242 347 IPR011990 GO:0005515
Vvi19g99 545 SUPERFAMILY HCP-like 313 520 - -
Vvi19g99 545 ProSiteProfiles TPR repeat profile. 311 344 IPR019734 GO:0005515
Vvi19g99 545 Pfam Tetratricopeptide repeat 455 513 - -
Vvi19g99 545 ProSiteProfiles TPR repeat profile. 452 485 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g99 K03353 APC6, CDC16; anaphase-promoting complex subunit 6 - vvi:100267422 1120.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g99 . . . . . . . Bma13g00927 Cmo16g00470 Cmo04g00718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00730 . . . . . . . . . Cma04g00672 Cma16g00435 . . Cpe14g00368 Cpe01g00606 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006118 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 2 6 1 39