Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g990 ATGAGCTTGAAGGCTGGCATCGTCGGACTCCCTAACGTTGGCAAATCCACTCTCTTCAACGCCGTTGTTGAAAATGGGAAGGCTCAAGCTGCGAATTTCCCCTTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATCCACGCCTCCATGTACTTTCTGATATCAGCAAATCTCAACGAGTAGTTCCAGCATCTATAGAATTTGTAGATATTGCTGGGCTTGTAAAGGGAGCCAGTCAAGGGGAGGGTTTGGGTAATAAGTTCTTATCACATATTCGGGAAGTGGACTCCATACTTCAGGTTGTACGCTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAAGTTGATCCAAAGTCTGATATCGATGTCATCAACTTAGAGCTAGTTTTCTCAGATTTAGATCAGATAGAGAAAAGAATGGAGAAGCTGAAAAAAGGCAAAGCAAAGGATTCACAATCTAAACTGAAGGAGGAAGCGGAGAAATCAGCCCTGGAAAGAATTCGGGAAGCACTTATGGATGGAAAACCAGCACGATCAGTAACTTTAACCGATTTTGAGAAAGATGCTATAAAGCATCTTTGTTTGCTTACAATGAAACCAATCATATATGTGGCTAATGTTGCAGAATCTGACTTAGCTGAGCCTGGAAGTAATCCCTATGTTAAAGAAGTGATGAACCTTGCATCTGAGTTGCAATCTGGAATTGTAACAATCTCAGCACAGGTTGAGTCAGAACTTACTGAACTTCCATCTGAAGAAAGAACAGAATTTCTGAAATCCCTTGGTGTCAGTGAAAGTGGCCTTGGAAACCTTATTAGAGCAACATATAGCCTTTTGGGGCTGCGTACATACTTTACTTCTGGTGAAAAGGAAACAAAAGCATGGACCATACTTGCAGGAATGACTGCACCTCAAGCTGCTGGAGTTATTCACTCAGACTTTGAGAAGGGTTTCATACGAGCTGAGACGGTGGCTTATGATGATTTTGTTGCTGCTGGTTCACTTGCAGCTGCTAGGGAAAAAGGACTTTTGAGATCCGAGGGAAAAGATTACATTGTACAAGAAGGAGATGTAATGCTGTTTCGTTTCAATGTTTGA 1113 41.87 MSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSDISKSQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEEAEKSALERIREALMDGKPARSVTLTDFEKDAIKHLCLLTMKPIIYVANVAESDLAEPGSNPYVKEVMNLASELQSGIVTISAQVESELTELPSEERTEFLKSLGVSESGLGNLIRATYSLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 19485256 19493771 + Vvi19g990 Vvi19g990 782489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g990 370 PIRSF EngD 1 370 IPR004396 GO:0005524|GO:0005525|GO:0016887
Vvi19g990 370 PRINTS GTP1/OBG GTP-binding protein family signature 5 25 IPR006073 GO:0005525
Vvi19g990 370 PRINTS GTP1/OBG GTP-binding protein family signature 27 45 IPR006073 GO:0005525
Vvi19g990 370 PRINTS GTP1/OBG GTP-binding protein family signature 71 86 IPR006073 GO:0005525
Vvi19g990 370 PRINTS GTP1/OBG GTP-binding protein family signature 88 106 IPR006073 GO:0005525
Vvi19g990 370 SUPERFAMILY TGS-like 286 367 IPR012676 -
Vvi19g990 370 PANTHER OBG GTPASE FAMILY 1 370 - -
Vvi19g990 370 Gene3D - 114 204 IPR023192 -
Vvi19g990 370 PANTHER OBG-LIKE ATPASE 1 1 370 - -
Vvi19g990 370 Pfam Protein of unknown function (DUF933) 286 369 IPR013029 -
Vvi19g990 370 CDD YchF 5 284 IPR041706 -
Vvi19g990 370 Hamap Ribosome-binding ATPase YchF [ychF]. 2 370 IPR004396 GO:0005524|GO:0005525|GO:0016887
Vvi19g990 370 TIGRFAM TIGR00092: GTP-binding protein YchF 1 370 IPR004396 GO:0005524|GO:0005525|GO:0016887
Vvi19g990 370 Gene3D - 3 285 IPR027417 -
Vvi19g990 370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 308 IPR027417 -
Vvi19g990 370 Pfam 50S ribosome-binding GTPase 5 117 IPR006073 GO:0005525
Vvi19g990 370 Gene3D - 49 369 IPR012675 -
Vvi19g990 370 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 3 263 IPR031167 GO:0005525
Vvi19g990 370 CDD TGS_YchF_OLA1 284 368 IPR013029 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g990 K19788 OLA1; obg-like ATPase 1 - vvi:100262744 704.131
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g990 . . . . . . . . . . Cma01g01304 Cma09g00739 Car01g01111 Car09g00649 . . Cpe02g00628 . . . . . . . Cla11g01598 Cam11g1664 Cec11g1693 Cco11g1689 Clacu11g1822 Cmu11g1634 Cre11g2050 Cone6ag0279 Cone9ag0315 . . Lsi04g01876 . . Cme07g00745 . . . . . . . . . Cmo01g01359 Cmo09g00731 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004300 2 4 0 0 1 0 1 0 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 7 4 1 40