Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g994 ATGATTAAGGCATTGGAAGGAATTCTTCAATGCAACAGTGAAGCTGTATTAATCATTGCAGCAAAGGTTGCATTGAAGTTAGTCCGGGACTTGCCCAGTTCAATGCTGCAATCTCATGTGTTACATCTTATTCAGCCTTTTTCATCTTTATTATCATCTCATCAAGTAAAAGTTGCTTCCCGGTGTGCAAATGGTTTGAATCATATCCTACCATATCTGAGTTTAAAGAAGGATGGAGTTATTTGGGAGATATTGAAAGAAACAAATGCAGTTATTCATGTTATCAATAATATACAAAAATTTTCCAGAGGAATGGAATCAATTAAATATTTCCAACGGATGGCTTCTCTTCTAAGGAGGATATTGTGGCAGTGGCCGCCCTCTCGCTATCGTGTATGGAATGATGCTGAGTTGTTGAGGGTTTTGGAGGTTATACGTGTAAATCCTGATTCTTCTGTTAAAGTTGCAGTTTTGCAATTGTATTCTGCTTTAGCTTTATGTGGTAATGGGGCTGAGAGGCTTCTAGAAAATGGAGAAAACCTTCTAAAAATGGTGGTGCAGTGCATGGACAGCACACAACCTCCTTCTGTTCGGATAGAGGCATTTAAACTCGCTCGGTTGTTGGCGATGAGTGGACAAAGGTGTTCAAAAATGATGAGATTGTGTTGTGAGCCCATTGTCCAAGCCATAATTTGTGGACTGAGGGGATGCAGCTTGTCAGATAGACAGATTGCTAAAGACCAGATTTCTTTGTTAGTGGAGGCAGGTCATTTGGCTCTGATTACTCGTTGGGCAGGGGAGCATCACATTTATTTTTGGAAGCTAGGAATTGACAGAGTTCTATCTACCCTTCTTCTAAGCAAATCTCATAAAGCTCAACCGCCTCAACATTCCTTGTCATTGAAAGAACTGAGAGCCATAACAGATGAGGGTCCTGCATTCATCTGGGATATTATTGGTGGGCTTGTAACCCACTGTGGGGAAGATTTCAATCCTGAGATGAATGGCAGTGACGTTTTCATCGGCATCCTTATTGGTTGTGCATGCTTGACCTTTGTGGACTCGGTTCATCAAAGTAGTCAGATTTATCAAGATGCTGCCAACAATATCAGTGGCCGTTCAGCATCTAGAGCAGTTCTGATGATGATTTATTCTCCCTGCAAATACATTGCATCACAGGCCCGATCCAAATTGTCTGAGGCTCTAAAGCCAGAAGGAAAGCATGAACGCACTTTCTTTAGCATAGTGGGATTGACGTGTTATTCGGGTTTGCCACAGTATCGAAAGTATGTTTTACAGAGTGAAGGGATAAAAATGCTGCTGGCCTTTATAAAGCAGTGCTTAAAAAATGATTTCCATTTGGGAAGGCTAAGTTTTGCCTCTAATTCACAAAATATGTTCAGTAGCTGGACATGTTGCCAGACATGTGCAGAAGATTGGGATGGCGGAGGCATTCTTGTGCTTTTTGGTCTGTGGGGACTAGCTGAATTGATCCACAATTCTGGTCCCATGAGAAATCACCCTGATTTATTTTGTGGTCAGATGGAATATACTGAAGCTCAATTCATTAATAAACTCCAAGAGATCTGCAGTGATACTTCTATTCCTGGGCTAAGATGGTATGCTGCATACCTTCTTAGTTATTTTGGAGTGTATGGTTTTCCAAGTAGACTTGGAAAAAGGATTGGGAACGCATTTGGTGAAAAGGAAAATGCAGATATGCAACTCATTCTTAAAAATGGAGAATCTTTGAGCATTCATGGTGTTTTCAAGAAAGAAGTTCATTTATCTTCTCATGTACATCACCTGCCATTAGTGAAGCTATTGGAATTTGTTTACTTGGGATATTTACAAGCAGGAGAAGACCTTTTGAAGTCATTGAAAAGTTTTGCTAAACATTGCAAACTGCAACCTCTACTACAAATGCTTCATAGAAATCGTCCAAAGTGGGGCATGGCTTTTCCTGGATTGGATCTTGCTCTTGCACTCAATTCTGATGGGCATACTTTTTCGGATGTTGCCTTGGAAGCTGAAGCAACTGAAGTGATGCAGTGGACATGCAAATTCTGCCCTGTTTTAGTGCCTCATATGCATGTCCACAAAGTCATATTGTGGTCAAGTTGTGATTATTTCCGGGCCATGTTCCGGTCAGGGATGCAGGAGAGCCGTTCCCCCTTCATAAAGGTCCCTGTTAGTTGGGAGGCATTGGTTAAACTAGTGGACTGGTTGTATTCTGATAAACTGCCAACACTCGTCACTGGCTGTTTATGGGATAACATGGATGAAAGGAAAAAGCTACAGGAGCTGCAACCGTACTTGGAGCTTTGTTGGCTTGCAGACTATTGGTTATTGGACAATATTCAGGAACACTGCTCAAGAGTGATCAACTCTTGCCTGGATTCTTCTGGAAACTTGTCTCTTGAAGTACTCCAGATAGCTGCTAGGCTCTCCCTGTGGAAGTTGGCTGAGACTGCAGTAAATCGCTTAGGCCCTTCTTATAGCCGTCTCCGCCTCACTGGTGAAATTGAAAAGCTGGATAAAGACCTTGCTGACATGGTTCGTGTTGCCTCTGTTCGACATTCCCAGGATTCAACCAAATGCAAGTTAGAAGAGTAA 2616 41.9 MIKALEGILQCNSEAVLIIAAKVALKLVRDLPSSMLQSHVLHLIQPFSSLLSSHQVKVASRCANGLNHILPYLSLKKDGVIWEILKETNAVIHVINNIQKFSRGMESIKYFQRMASLLRRILWQWPPSRYRVWNDAELLRVLEVIRVNPDSSVKVAVLQLYSALALCGNGAERLLENGENLLKMVVQCMDSTQPPSVRIEAFKLARLLAMSGQRCSKMMRLCCEPIVQAIICGLRGCSLSDRQIAKDQISLLVEAGHLALITRWAGEHHIYFWKLGIDRVLSTLLLSKSHKAQPPQHSLSLKELRAITDEGPAFIWDIIGGLVTHCGEDFNPEMNGSDVFIGILIGCACLTFVDSVHQSSQIYQDAANNISGRSASRAVLMMIYSPCKYIASQARSKLSEALKPEGKHERTFFSIVGLTCYSGLPQYRKYVLQSEGIKMLLAFIKQCLKNDFHLGRLSFASNSQNMFSSWTCCQTCAEDWDGGGILVLFGLWGLAELIHNSGPMRNHPDLFCGQMEYTEAQFINKLQEICSDTSIPGLRWYAAYLLSYFGVYGFPSRLGKRIGNAFGEKENADMQLILKNGESLSIHGVFKKEVHLSSHVHHLPLVKLLEFVYLGYLQAGEDLLKSLKSFAKHCKLQPLLQMLHRNRPKWGMAFPGLDLALALNSDGHTFSDVALEAEATEVMQWTCKFCPVLVPHMHVHKVILWSSCDYFRAMFRSGMQESRSPFIKVPVSWEALVKLVDWLYSDKLPTLVTGCLWDNMDERKKLQELQPYLELCWLADYWLLDNIQEHCSRVINSCLDSSGNLSLEVLQIAARLSLWKLAETAVNRLGPSYSRLRLTGEIEKLDKDLADMVRVASVRHSQDSTKCKLEE* 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 19553943 19559065 + Vvi19g994 Vvi19g994 782493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g994 871 SUPERFAMILY POZ domain 696 795 IPR011333 -
Vvi19g994 871 Pfam BTB/POZ domain 696 796 IPR000210 GO:0005515
Vvi19g994 871 Gene3D Potassium Channel Kv1.1; Chain A 657 829 IPR011333 -
Vvi19g994 871 ProSiteProfiles BTB domain profile. 671 748 IPR000210 GO:0005515
Vvi19g994 871 SMART BTB_4 671 799 IPR000210 GO:0005515
Vvi19g994 871 Gene3D - 1 262 IPR011989 -
Vvi19g994 871 SUPERFAMILY ARM repeat 5 638 IPR016024 -
Vvi19g994 871 CDD BTB_POZ_ZBTB_KLHL-like 670 748 - -
Vvi19g994 871 PANTHER OS06G0674800 PROTEIN 1 863 IPR044953 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g994 - - - vvi:100264649 1718.75
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g994 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004492 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 4 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14450 PF00651 BTB 2.30E-09 CL0033 Vvi TR