Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g998 ATGGCCAAGCCAGGCCGAGGTCGCCCATCTCCACCATCTGGCTCCGCTTCGGGTTCCTCCTCTCGCTCCCGCTCCCGCTCCTACTCCGGCTCTGATTCTCGCTCCTCCTCTCGATCTCGCTCTCCTTCCCGCTCAAGATCCTTCTCTTCATCTTCGTCTCAGTCGCGCAGTGTCAGCTCTCGCAGTCGAAGCGTTTCTCCTAAGAGAAAAAGTCCTGAAGTAGCTAAGCGAGGTCGCTCCCCACCACCACAATCTAAAAGAACTTCTCCTCCTCCAAGGAAAGTTTCTCCCATTCGCGAATCTCTTGTTCTTCACATTGGTTCACTCTCCAGGAATGTGAATGAAGGCCATCTAAAAGAGATATTTAGTAACTTTGGTGAAGTTGTACATGTAGAGCTGGCAATGGATCGCACTGTTAATCTTCCAAAAGGATATGGATATGTTGAATTCAAGACAAGATCTGATGCTGAAAAAGCTCAATTATACATGGATGGTGCTCAAATTGATGGGAATGTTGTTAGAGCAAAGTTCACATTGCCTCAGAGGCAGAAGATTTCATCACCCCCAAAGGCTGTTGCTACTGCTTCAAAGAGAGATGGCCCAAAAACTGATAATGTTGGTGCAGATGTTGAAAAGGATGGACCAAAGCGGCAGAGAGAAGCTTCTCCCCGTCGGAAACCTCCTTCTCCACCACGAAGGAGATCCCCTGCTCCAGGTCGACGAGGTGGATCTCCAAGACGACAGTTAGATTCACCTCAGCGTCGTCGTGGAGAGAGTCCCATTCGACACCGAGTAGAATCTCCTTATCGCCGGGGTGAAACACCTCCTAGGAGGAGACCTGCATCTCCATCCAGAGGTCGTTCTCCACTTTCTCCACCAAGGCGGCATAGATCACCTGCAAGGGCCTCTCCCCGAAGGATGCGTGGCAGTCCTGTCCGCAGGCGATCTCCACCTCCTCCAAGGCGCCGCTCACCTCCCAGACGAGCTAGGAGTCCACCTATGCCTAGAAGGTCTCCAGTCAATCGCAGACGGAGCCGCTCCCCCCCTGTTCGTAGGCCTGTTCGTTCACGTTCAAGGTCAATCTCCCCACGGAGAGGACGAGCACTAGCTGCCAGACATAGGAGGTCGTCATCCTACTCTGGATCGCCTAGTCCACGCAAGGCTGTTCGGAAGATGTCAAGGAGTGGCAGTCCTAGAAGGCCTCTGAGAGGAAAAAGCAGTAGCAACAGCAGCAGCAGCGGTACCCCTCCACGGAAGCCATAA 1263 52.97 MAKPGRGRPSPPSGSASGSSSRSRSRSYSGSDSRSSSRSRSPSRSRSFSSSSSQSRSVSSRSRSVSPKRKSPEVAKRGRSPPPQSKRTSPPPRKVSPIRESLVLHIGSLSRNVNEGHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRSDAEKAQLYMDGAQIDGNVVRAKFTLPQRQKISSPPKAVATASKRDGPKTDNVGADVEKDGPKRQREASPRRKPPSPPRRRSPAPGRRGGSPRRQLDSPQRRRGESPIRHRVESPYRRGETPPRRRPASPSRGRSPLSPPRRHRSPARASPRRMRGSPVRRRSPPPPRRRSPPRRARSPPMPRRSPVNRRRSRSPPVRRPVRSRSRSISPRRGRALAARHRRSSSYSGSPSPRKAVRKMSRSGSPRRPLRGKSSSNSSSSGTPPRKP* 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 19626825 19643204 + Vvi19g998 Vvi19g998 782497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g998 420 Gene3D - 13 187 IPR012677 -
Vvi19g998 420 MobiDBLite consensus disorder prediction 12 65 - -
Vvi19g998 420 MobiDBLite consensus disorder prediction 179 420 - -
Vvi19g998 420 MobiDBLite consensus disorder prediction 337 372 - -
Vvi19g998 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 173 IPR000504 GO:0003723
Vvi19g998 420 MobiDBLite consensus disorder prediction 400 420 - -
Vvi19g998 420 SUPERFAMILY RNA-binding domain, RBD 97 188 IPR035979 GO:0003676
Vvi19g998 420 PANTHER BNAA09G56240D PROTEIN 24 408 - -
Vvi19g998 420 CDD RRM_RNPS1 104 176 IPR034201 -
Vvi19g998 420 MobiDBLite consensus disorder prediction 247 280 - -
Vvi19g998 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Vvi19g998 420 MobiDBLite consensus disorder prediction 202 227 - -
Vvi19g998 420 MobiDBLite consensus disorder prediction 290 330 - -
Vvi19g998 420 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 24 408 - -
Vvi19g998 420 MobiDBLite consensus disorder prediction 1 98 - -
Vvi19g998 420 SMART rrm1_1 103 176 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g998 K14325 RNPS1; RNA-binding protein with serine-rich domain 1 - vvi:100267894 372.859
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g998 . . . . . . . . . . Cma01g01306 Cma09g00736 Car01g01114 Car09g00646 . . Cpe02g00625 . . . . . . . Cla11g01601 Cam11g1667 Cec11g1696 . . Cmu11g1637 . . . . . Lsi04g01879 . . Cme07g00708 . . . . . . . . . Cmo01g01363 Cmo09g00728 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008093 2 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 1 2 1 31