Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1000 ATGCTCAACCACATCTATCCATGGAGGTCTTTACTCCGAAAATCTCTCAACCTCAGCCCCATCACTTCCCTCGGCTTCACCAAACACTCAGTCTCTGCCGCCAAGCTCCATGATGAGTCCGCCGACGCCTCTATCCCTAATGACGCCGTTCGCCAAATCCTCATTGGTTTAAGAAGCTTTGGTGCTTCTAAGTTTCTCTGGGGGCATCATTTCCAAACCCTAGCTTCGGTACTGAATACCCATCAGGTTGATCAAATTCTCCTTAGTTTGAGAGTCGATAACTCCGACTCTGCGCTTTTTTTGTTTGATTTATTAAGAAATGAGTATGGATTTCGGCATTCTAGGGTTTCCTGGTTCATTGTTTCGCATGTTGTGGCCCGAAAAGGACAGTCCAAGGAGTTGCGCCGCGTTTTAAACCAAATGGTGGAAGAAGAAGGTTCTGGGTCTGCGCCTTCCCTTTGTGAGCTTCTGTGTAATAGCTTCAGGGACTGGGATTTGAATAATGTGGTATGGGATATGCTGGCTTGTGCTTATTCAAGGGCTGAGATGGTTCATGATGCCCTTTTTGTTCTTGCTAAGATGAAAGTCCTGAACTTGCAAGTTTCAATAGCAACCTACAACAGTTTGTTGTACAACCTTAGGCACACTGATATTATGTGGGACGTCTATAATGAAATCAAAGCAAGTGGGGTTCCACAGAATGAGTACACAAATCCCATCCTTATAGATGGTCTGTGCAGGCAGTCCAGGCTACAAGATGCAGTAACTTTCTTGAGGGAGACCGGGGGGGAAGAGTTTGGGCCTTCTGTTGTTTCATTCAATGCCCTCATGTCAGGGTTTTGTAAAATGGGTTCTGTGGATGTTGCAAAGTCATTTTTCTGCATGATGATTAAATATGGATTACTTCCTGATGTGTATAGTTACAATATTCTTCTTCATGGGCTATGTGTAGCAGGTTCTATGGAAGAAGCATTAGAGTTTACAAATGACATGGAGAATCATGGAGTGGAACCTGATATAGTTACCTATAACATTCTTGCTAATGGTTTTCGCATACTTGGTTTGATAAGTGGGGCTTGGAAGGTTGTTCAGAGAATGCTGCTTAATGGGTTAAATCCAGATCTCGTTACATATACAATACTGATCTGTGGGCATTGCCAGATGGGCAATATTGAAGAAAGCTTTAAGTTGAAGGAGAAAATGCTTTCACAAGGTTTAAAGTTGAGTATTGTCACATACACTGTATTGTTAAGCAGTTTGTGTAAGAGTGGACGAATTGATGAAGCAGTGATATTGCTTCATGAAATGGAAGTTATTGGCTTGAAGCCAGATCTTTTAACATATTCTCGAGGGGCAGTAGAAGAGGCTATTGAACTATATGAGGAAATGTGCTCCAAGAGAATTTACCCAAATTCTTTTGTATGCAGCGCTATTATATCAGGTCTTTTTGAAAAAGGGGCAATTTCAGAGGCACAAATGTATTTTGATTCAGTAACAAAGAGTGATGTGGCAGAGGAAATCATTTTGTACAATATTATGATTGATGGGTATGCAAAACTTGGTAATATTGGGGAAGCTGTACGGTCATACAAACAGATAATCGAAAAAGGAATTTCTCCAACTATTGTGACTTTCAATTCCCTTATTTATGGTTTCTGCAAAAAGGGAAAGCTAGCTGAGGCTGTAAAGTTATTAGATACTATCAAGGTGCATGGTTTGGTGCCAACTTCTGTAACTTACACGACTCTAATGAATGGATACTGTGAAGAGGGAGATATGCATAGCATGTTTGACATGCTTCATGAAATGGAAGCAAAAGCTATAAAACCTACTCAAATCACTTATACTGTAGTTGTGAAAGGACTCTGCAAAGAGGGGCGGCTGCATGAATCTGTTCAATTACTCAAGTATATGTATGCTAGGGGTCTATTCCCAGATCAAATCACATATAATACTGTAATTCAAAGCTTCTGCAAAGCTCATGACCTACAAAAAGCTTTTCAGTTACACAATCAAATGTTACAGCATAGTCTTCAGCCTAGTCCTGTTACATATAATGTTCTTATTAATGGCCTTTGTGTATATGGCAACTTAAAGGATGCTGATAGACTACTGGTTACTCTTCAGGACCAAAGTATAAGATTAACAAAGGTTGCCTACACAACAATAATCAAAGCACATTGTGCTAAGGGTGATGTACAGAATGCACTGGTCTTCTTCCATCAAATGGTGGAGAGGGGTTTTGAGGTTTCCATCAGAGATTATAGTGCTGTGATCAATAGATTGTGCAAAAGGAATTTAATAACTGATGCAAAATTTTTTTTCTGTATGATGTTAACTCATGGCATTCCTCCTGATCAAGATATTTGTTTGGTGATGCTCAATGCTTTCCATCGAAGTGGTGATCCCAATTCAGTATTTGAGATATTTGCTATGATGATAAAATGTGGCCTGCTTCCTGTTTAA 2466 40.02 MLNHIYPWRSLLRKSLNLSPITSLGFTKHSVSAAKLHDESADASIPNDAVRQILIGLRSFGASKFLWGHHFQTLASVLNTHQVDQILLSLRVDNSDSALFLFDLLRNEYGFRHSRVSWFIVSHVVARKGQSKELRRVLNQMVEEEGSGSAPSLCELLCNSFRDWDLNNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLPV* 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15701473 15704472 + Vvi1g1000 Vvi1g1000 770200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 263 354 IPR011990 GO:0005515
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 712 820 IPR011990 GO:0005515
Vvi1g1000 821 SUPERFAMILY HCP-like 451 567 - -
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 503 593 IPR011990 GO:0005515
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 69 214 IPR011990 GO:0005515
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 450 502 IPR011990 GO:0005515
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 786 820 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Vvi1g1000 821 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 16 818 - -
Vvi1g1000 821 Pfam PPR repeat family 373 422 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat family 268 316 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat family 645 693 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat family 718 764 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat family 575 624 IPR002885 -
Vvi1g1000 821 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 16 818 - -
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 215 262 IPR011990 GO:0005515
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 355 449 IPR011990 GO:0005515
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 594 711 IPR011990 GO:0005515
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 751 785 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat 169 197 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat 341 371 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat 792 818 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat 451 467 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat 536 567 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 718 751 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 755 786 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 411 444 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 648 681 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 271 305 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 543 576 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 376 409 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 613 646 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 683 714 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 509 541 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 306 340 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 578 611 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1000 - - - vvi:100256494 1635.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1000 . . . . . . . . Cmo04g01645 . . . Car04g01622 . Sed07g2016 . Cpe01g01394 Bhi07g01446 Tan04g0955 Cmetu04g0673 . . . . Cla05g02374 Cam05g2544 Cec05g2576 Cco05g2615 Clacu05g2543 Cmu05g2402 Cre05g2519 . . . . Lsi04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009359 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 2 2 32