Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1004 ATGGGGTCTGCGACGTCGTCGATGGCGGCCAAGTTTGCATTTTTCCCTCCTAACCCTCCTACGTATAAAGTAGTTTCCGATGAATCCACCGGAAAAATGAGACTCTCCGACGTGCCTCAGAGAGAGAACGTGGACGTGTTGAAGCTGTGCACGAAGAAAGGGAACGAGATAGTTGCAGTGTACGTGAAGAACCCTTCAGCGTCAGTGACAGTGCTCTACTCTCATGGCAATGCAGCTGATCTTGGTCAGATGTTTAACATCTTCGCCGAACTGAGTCTTCGTCTGGGGGTGAATCTCATGGGGTACGATTATTCTGGGTATGGACAATCCTCTGGAAAGCCAAGTGAGCAGGACACATATGCAGACATAGAGGCTGCTTACAGTTGCCTCGAAGACACCTATGGAGTGAAGGAGGAAGACATTATACTGTATGGGCAGTCGGTTGGCAGTGGACCTACTCTAGAATTAGCCACTTGTTTCGCTCGATTGAGGGCTGTTATTCTTCACAGTCCAATCCTATCTGGGCTTCGAGTCATGTATCCTGTGAAGCGAACATTTTGGTTTGATATCTACAAGAATATTGATAAAATTCCACTGGTGAATTGCCCTGTTCTGGTCATTCACGGAACGGATGATGAAATTGTGGATTGGTCCCATGGTAAGCAGCTGTGGGAGCTCTGTAAAGAGAAGTATGAACCTTTGTGGCTTAAAGGAGGGAACCACTGTAACTTAGAGCTCTATCCAGAGTACCTAAGGCATCTCAAGAAGTTCATATCAGCCATAGAGAAATTGCCATGTGCACAATATATATCTGGACAAAGTACAGATCAATCAGAGCGGTCTGTGAATTCCACAGACCATAGAGACAGGTCCAGAACAAGCACAGACCATAGGGAAAAGTCCAGATTAAGCAATGGGCAAAGAGAAAAATCTAGGCCAAGCACGGACAGCAGAGAGAAGTCCAGAGCCAGCACCGACCGGAGAGAGAAGTCAAGAAGGAGCTATGATCGATCAGGGAAAGCAAGGAACAGCATAGACCAGTCAGAGAGAGCGAGAAACAGCTTTGATCGCTTGGGAGATATGGTAAGATCAGTTGGGTTGTGCAATGTTGATTGTTTCAAGCAGACAGCCACAGAGGTCTGA 1143 46.98 MGSATSSMAAKFAFFPPNPPTYKVVSDESTGKMRLSDVPQRENVDVLKLCTKKGNEIVAVYVKNPSASVTVLYSHGNAADLGQMFNIFAELSLRLGVNLMGYDYSGYGQSSGKPSEQDTYADIEAAYSCLEDTYGVKEEDIILYGQSVGSGPTLELATCFARLRAVILHSPILSGLRVMYPVKRTFWFDIYKNIDKIPLVNCPVLVIHGTDDEIVDWSHGKQLWELCKEKYEPLWLKGGNHCNLELYPEYLRHLKKFISAIEKLPCAQYISGQSTDQSERSVNSTDHRDRSRTSTDHREKSRLSNGQREKSRPSTDSREKSRASTDRREKSRRSYDRSGKARNSIDQSERARNSFDRLGDMVRSVGLCNVDCFKQTATEV* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15756275 15759027 + Vvi1g1004 Vvi1g1004 770204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1004 380 MobiDBLite consensus disorder prediction 281 351 - -
Vvi1g1004 380 Pfam Serine aminopeptidase, S33 69 175 IPR022742 -
Vvi1g1004 380 Gene3D alpha/beta hydrolase 42 259 IPR029058 -
Vvi1g1004 380 SUPERFAMILY alpha/beta-Hydrolases 4 259 IPR029058 -
Vvi1g1004 380 MobiDBLite consensus disorder prediction 272 351 - -
Vvi1g1004 380 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 316 - -
Vvi1g1004 380 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 1 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1004 K01076 ABHD17; abhydrolase domain-containing protein 17 [EC:3.1.2.22] - vvi:100242683 760.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1004 Vvi14g972 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1004 . . . Bda11g01164 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0516 . . . . . . . Bda11g01164 . . . . . Cmo04g02953 . . . . Car15g00221 Cpe13g00994 . . . . . . . . . . . . . . . . . Chy09g00382 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000437 3 6 3 3 4 4 5 4 4 4 3 4 5 4 4 4 4 6 3 4 4 4 4 4 4 2 4 6 4 4 121