Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1005 ATGGCTCCTGTTCTGAGCAGAAGCTTGGCCACTGCGCCTCTCACTTCTTTTCCACTCAACAATATCAATAACAACAGGAGGGTCTTGAATTTGAGAAATACTTTTAAGAGAGGCAGTCGCGTGGGTGTTCGCTGCGAGGCTGGTGTTGCTGAGAAAGAAGCTCCCGATACGCCCGGAGAGAAGTTCGAATACCAGGCCGAGGTCAGTCGCCTACTTGATTTGATAGTCCATAGTCTATACAGCCACAAGGAAGTATTTCTAAGAGAGCTCGTGAGTAATGCAAGTGATGCTCTTGATAAGTTGAGATTCCTAAGTGTGACAGAGCCCTCTCTACTTGGAGATGCTGGTGAGCTAGAAATACGCATAAAACCTGATCCCGATAATGGAACCATTACTATAACAGATACTGGTATTGGAATGACCAAGGAAGAGCTCATTGACTGTCTTGGAACTATAGCTCAGAGTGGTACTTCAAAATTCTTGAAGGCTCTTAAGGAAAATCAGGATCTCGGGGCTGATAATGGGTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCATTTCTGGTTGCTGAGAAGGTGACAGTGTCAACGAAGAGCCCACGGTCAGAAAAGCAATATGTTTGGGAAGCTGTAGCTGACAGTAGTTCTTATGTGATCAGAGAAGAAACTGATCCTGAGAAGTCCCTGCCTCGTGGAACACAAATCACCCTCTACTTAAGGCCAGATGACAAATATGAATTCTCAGAGCCATCCAAGATTCAGAGTTTGGTGAAGAACTACTCACAGTTCGTTTCCTTCCCCATCTATACATGGCAAGAGAAATCAAGGACTGTTGAGGTGGAAGAGGAGGAAGAACCAAAAGAGGGAGAAGAAGCAAAACCAGAGGATCAGAAGAAAAAGAAGAAGACTATAACTGAGAAATACTGGGACTGGGAACTAGCCAATGAAACAAAACCTATTTGGATGCGGAATCCAAGGGAAGTGGAAAAGGATGAGTACAACGATTTCTACAAGAAAACTTTTAATGAGTTCTTGGATCCACTTTCACACATCCACTTCACCACAGAGGGTGAGGTTGAATTTAGGAGTATTCTTTATATTCCTGGAATGGGACCTCTTAACAATGAGGATGTAATGAATCCCAAAACAAAGAACATACGTTTGTATGTGAAGCGTGTATTCATTTCAGATGACTTTGATGGTGAGCTGTTTCCACGGTACTTAAGCTTTGTGAAAGGTGTGGTGGATTCAGACGACCTTCCTCTCAATGTTTCGCGGGAGATTCTGCAAGAAAGCCGAATTGTCAGAATTATGAGAAAGAGACTTGTCAGGAAAACGTTTGACATGATACAAGAGGTTTCTGAAAGTGAAAACAAAGAGGATTACAAAAAATTCTGGGAGAACTTTGGAAGGTTTCTAAAGTTAGGATGCATCGAGGACACTGGGAATCACAAGCGCATAACACCACTATTAAGGTTCCACACTTCCAAAAGTGAGGAGGAATTGACTAGCTTAGATGATTATGTTGAAAACATGGGTGAGAATCAAAAGGCTATCTACTACTTGGCAACAGATAGCTTAAAAAGTGCAAAGACTGCACCATTCTTAGAGAAGTTGGTTCAAAAGGATATTGAGGTTCTATATCTAATTGAGCCTATTGATGAAGTTGCCATCCAGAACCTGCAGACCTACAAAGAAAAGAAATTTGTTGACATTAGCAAGGAGGATTTGGAGCTTGGTGATGATGATGAAGTCAAAGAACGGGAAACCAAACAAGAATATAATCTTCTCTGTGATTGGATAAAGCAACAGCTTGGTGATAAGGTTGCAAAAGTCCAAGTCTCAAAGCGTCTAAGCTCATCCCCTTGTGTTCTTGTTTCTGGCAAGTTTGGATGGTCTGCTAATATGGAAAGGTTAATGAAAGCACAGGCTCTTGGAGACACTTCCTCTTTGGAGTTCATGAGGGGAAGGAGAATATTGGAGATCAATCCAGATCATCCCATCATTAAAGACCTAAATGCTGCATGCAAGCTAGAGCCTGATAGCAGTGAGGCCAGGAGAGCTGTGGACCTTTTATATGATACAGCATTGATTTCCAGTGGATTCTCTCCTGACAGCCCAGCTGAGTTGGGAAACAAGATATATGAGATGATGTCAATGGCTCTTGGAGGACGATGGGGACGAGCAGAAGGGGAAGGGGAAGAGGAAGAGGAAGAGAAAGAGGCTGAAAGCGATCCTTGGAATGATTAA 2253 42.74 MAPVLSRSLATAPLTSFPLNNINNNRRVLNLRNTFKRGSRVGVRCEAGVAEKEAPDTPGEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGELEIRIKPDPDNGTITITDTGIGMTKEELIDCLGTIAQSGTSKFLKALKENQDLGADNGLIGQFGVGFYSAFLVAEKVTVSTKSPRSEKQYVWEAVADSSSYVIREETDPEKSLPRGTQITLYLRPDDKYEFSEPSKIQSLVKNYSQFVSFPIYTWQEKSRTVEVEEEEEPKEGEEAKPEDQKKKKKTITEKYWDWELANETKPIWMRNPREVEKDEYNDFYKKTFNEFLDPLSHIHFTTEGEVEFRSILYIPGMGPLNNEDVMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQEVSESENKEDYKKFWENFGRFLKLGCIEDTGNHKRITPLLRFHTSKSEEELTSLDDYVENMGENQKAIYYLATDSLKSAKTAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTYKEKKFVDISKEDLELGDDDEVKERETKQEYNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIIKDLNAACKLEPDSSEARRAVDLLYDTALISSGFSPDSPAELGNKIYEMMSMALGGRWGRAEGEGEEEEEEKEAESDPWND* 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15794279 15805183 + Vvi1g1005 Vvi1g1005 770205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1005 750 SMART HKATPase_4 82 244 IPR003594 -
Vvi1g1005 750 PIRSF HSP90_HTPG 23 749 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi1g1005 750 Gene3D - 489 576 - -
Vvi1g1005 750 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 60 275 IPR036890 -
Vvi1g1005 750 PRINTS 90kDa heat shock protein signature 60 80 IPR020575 -
Vvi1g1005 750 PRINTS 90kDa heat shock protein signature 81 103 IPR020575 -
Vvi1g1005 750 PRINTS 90kDa heat shock protein signature 130 147 IPR020575 -
Vvi1g1005 750 PRINTS 90kDa heat shock protein signature 148 165 IPR020575 -
Vvi1g1005 750 PRINTS 90kDa heat shock protein signature 177 199 IPR020575 -
Vvi1g1005 750 PRINTS 90kDa heat shock protein signature 232 249 IPR020575 -
Vvi1g1005 750 PRINTS 90kDa heat shock protein signature 251 269 IPR020575 -
Vvi1g1005 750 SUPERFAMILY HSP90 C-terminal domain 598 719 IPR037196 -
Vvi1g1005 750 PANTHER HEAT SHOCK PROTEIN 90-5, CHLOROPLASTIC 15 746 - -
Vvi1g1005 750 MobiDBLite consensus disorder prediction 733 750 - -
Vvi1g1005 750 Gene3D - 316 488 - -
Vvi1g1005 750 MobiDBLite consensus disorder prediction 727 750 - -
Vvi1g1005 750 SUPERFAMILY Ribosomal protein S5 domain 2-like 318 576 IPR020568 -
Vvi1g1005 750 Gene3D - 47 290 IPR036890 -
Vvi1g1005 750 ProSitePatterns Heat shock hsp90 proteins family signature. 80 89 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vvi1g1005 750 Gene3D - 577 723 IPR037196 -
Vvi1g1005 750 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 83 242 IPR003594 -
Vvi1g1005 750 CDD HATPase_Hsp90-like 69 265 - -
Vvi1g1005 750 MobiDBLite consensus disorder prediction 278 300 - -
Vvi1g1005 750 Hamap Chaperone protein HtpG [htpG]. 50 720 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi1g1005 750 Pfam Hsp90 protein 247 744 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi1g1005 750 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 15 746 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1005 K09487 HSP90B, TRA1; heat shock protein 90kDa beta - vvi:100264968 1360.13
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1005 Blo01g00465 . Bda01g01785 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0515 . . . . . . . . . Bpe02g01962 Bma01g00137 . . . Cmo15g00882 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001704 2 2 2 3 2 2 3 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 3 2 2 3 2 2 70