Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1007 ATGATGGTCATTTCAAGCAGTAGCTCCGATTGGACCTGGACCAACGAAGACACAAGTCCAGTCTCCAGTCTTATTCAATCCTTGTTGGTATCTATTTCAGAGATCACGGCATCAGTAGTCTGCATAAACGTAGAACAGGAAAGCTTTATGGAACTTGGAAGTTATCTATACAGGACCTCTCCTGCCATAATAGAGTTGCAGACAACAAAAAATACCCCAGAAAATGCAATGAGGATTTTACAATCTCTATCCAAAAGCGTTGATTTGGCCAAGAATCTCGTGGGGCAATTGCAAAAGGACAGCCATCCAATTTCAGACCCTGAACTGGGAAGCATTATAGAACAGCTTGAGGGAGTGATAAAACTGATGGGAGAAGAATTGAGCTTGATACCACCATCAACATTTGGGAACCAAGAATATGCAGAAATTGCAGTCCGGTCTGTTTCAAAGGAGATGCAAAATGCTCGGTTTGGGGTCTGCCAAACGCAGCTACCAGACATACCACATCATATGAACGTCATTCCTAAAAGCAAATGTTACAGGAGCCAGAGAAACCATGAAAACATGAGCAATGGATCCCTGAAGAATATGCCACAAGTGACCCAGTTCATGGAGCCTTTCTATGAGACTTTCTTTTGCCCACTGACAAAGAATATCATGGAAGACCCAGTGACCATAGAAAGTGGAGTTACTTATGAAAGGAAAGCAATTACTGAATGGTTCGAAAAGTATAACAATTCAGCAGAAATTTGCTGTCCAGCCACAGGGCAAAAACTGCGTAGTAAAGGTTTGAGCACCAATATAGCTCTGAAGACCACAATAGAGGAGTGGAAGGAAAGGAATGAAGCAGCAAGAATCAAGGTTGCAAGAGCAGCTCTGTCTTTAGCCATTTCAGAGAGTATGGTACTTGAAGCACTAAATGATTTGCAGAGCATCTGTGGAAGGAAACCGTACAACAAGGTACAGATTCGCAATGTTGGAATGTTACCATTGCTTGTGAAGTTTCTGGAGTATAAAGACACGAATGTGAGACTTGCAACTCTGGAAATACTACGAGAACTGGCAGAAGATGATGAGGGCAAGGAAATGGTTGCAAAGGTAATGGACATTTCAACAACAATCAAGATGCTGTCAAGTGATCACCAACCCATAAGGCATGCAGCACTGCTGTTCTTGCTGGAGCTATCTAGATCCCAATCTCTCTGTGAGAAAATCGGGTCGGTTGCGGGAGGGATTCTAATGCTAATCACAATTAAATACAACTGGTCCTTTGATACTTTCGCATTAGAAAAGGCAGATGAAATCTTGAAAAACCTGGAGACATCTCCTAATAACATCAAGCGCATGGCAGACAATGGATACTTGGAACCCCTTCTACATCATCTCATTGAAGGTTGTGAAGAGATGAAGATGGAGATGGGAAGCTACCTTGGGGAAATTGCTTTGGGACACGACAGCAAAACCTATGTAGCTGAGAGGGCTTCCCCGGCTCTTGTCAAAATGTTACATACTGGGAACACTCTAACAAAGAAGGCAGCATTCAAAGCTCTAGAGCAAATCTCATCTTACCACCCAAATGGAAAAATACTTGTAGAAGCTGGAATTGTACAGATCGTGGTAGAAGAGATGTTGACCCCACGGAAAATCCACAATGAAACAATGAACTCAATAAAAGAAGCTGCTGCAATACTGGGAAATTTACTCGAATCCGGGATTGAGTTTGAGAACCTCCAAAACTCAACCCCAGATAAACTCAACACCAACCTGATAAGAATCCTGTTGTGCTTGGCCAAGTCCCCCAAATCAAATGCCACCATAGTGTCAGTGGTGAGAGAAACTGAAGCAAGCTACACCCTGATTGAACTCATAAATAACCCACATGAAGAACTGGGGATTGCATCAATGAAACTGCTCATTACACTCTCACCCTACCTTGGCCACACATTTGCAGAGAGACTATGCAAAACAAGGGGCCAACCTCAGAGCCTACTCCAAAGCCCAGGTGGGACAAACCAAATCACACAGAAGCAGGCAGTTTCAGCAAATTTCTTGGCAGACCTCCCCCACCAAAACCTGAGACTCAACCTAGCTCTTCTCAGCAATGATAGTGTCCCAATGATCCTACAATCCATCCATCAAATGCAAAGAAGTGGAACAAGAACAAGCAGGTATGCAAGTGCTTACTTAGAAGGCCTAGTGGGAATTATTGTCAGATTCACAACTACCCTATTTGAACCCCAAATGTTGTTTCTAGCGAGAAACTACAATTTCACTTCAGTGCTCACAGAACTGCTTACAAAAACATCAAGTGACAAAGTTCAGAGGTTATCAGCAATAGGGTTAAAAAACCTCTCATCAGAATCAGTAAATCTATCTAAACCACCACAAATAAAGAGAACCAAGTTCCTGAAATTTTTTAAGTTGCCCAGGTCTCTATCTGCTGGGTCATCAAAGAGCAAGAAAATACAAGTGCTGTTGGCTTGCTTGGAGCATGAAAATGCCGAGGTTATTGAAGCTGCATTGTCCGCTCTATGCACATTGTTGGATGACAAAGTTGATGTGGACAAGAGTGTGAGCCTGCTCAGTGGAGTGGATTGCATACAACATGTGTTGAATGTGGTGAAAGAGCACAGGGAAGAGGGTTTGAGGGAAAAATCACTTTGGGTGATAGAGAGATTCCTGATGAAAGGTGGCGATAGGTCTGCTTCATACATATCACAGGACAGGTCGTTGCCTGCTACATTGGTAAGTGCTTTTCACCATGGGGACGGTAGTACAAAGCAGATGGCTGCGAAAATTTTAAGACATTTGAATCAGATGCCCAAAGTCACTACCAACTTTACTATCTAG 2850 42.95 MMVISSSSSDWTWTNEDTSPVSSLIQSLLVSISEITASVVCINVEQESFMELGSYLYRTSPAIIELQTTKNTPENAMRILQSLSKSVDLAKNLVGQLQKDSHPISDPELGSIIEQLEGVIKLMGEELSLIPPSTFGNQEYAEIAVRSVSKEMQNARFGVCQTQLPDIPHHMNVIPKSKCYRSQRNHENMSNGSLKNMPQVTQFMEPFYETFFCPLTKNIMEDPVTIESGVTYERKAITEWFEKYNNSAEICCPATGQKLRSKGLSTNIALKTTIEEWKERNEAARIKVARAALSLAISESMVLEALNDLQSICGRKPYNKVQIRNVGMLPLLVKFLEYKDTNVRLATLEILRELAEDDEGKEMVAKVMDISTTIKMLSSDHQPIRHAALLFLLELSRSQSLCEKIGSVAGGILMLITIKYNWSFDTFALEKADEILKNLETSPNNIKRMADNGYLEPLLHHLIEGCEEMKMEMGSYLGEIALGHDSKTYVAERASPALVKMLHTGNTLTKKAAFKALEQISSYHPNGKILVEAGIVQIVVEEMLTPRKIHNETMNSIKEAAAILGNLLESGIEFENLQNSTPDKLNTNLIRILLCLAKSPKSNATIVSVVRETEASYTLIELINNPHEELGIASMKLLITLSPYLGHTFAERLCKTRGQPQSLLQSPGGTNQITQKQAVSANFLADLPHQNLRLNLALLSNDSVPMILQSIHQMQRSGTRTSRYASAYLEGLVGIIVRFTTTLFEPQMLFLARNYNFTSVLTELLTKTSSDKVQRLSAIGLKNLSSESVNLSKPPQIKRTKFLKFFKLPRSLSAGSSKSKKIQVLLACLEHENAEVIEAALSALCTLLDDKVDVDKSVSLLSGVDCIQHVLNVVKEHREEGLREKSLWVIERFLMKGGDRSASYISQDRSLPATLVSAFHHGDGSTKQMAAKILRHLNQMPKVTTNFTI* 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15888299 15892532 + Vvi1g1007 Vvi1g1007 770207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1007 949 Pfam U-box domain 209 282 IPR003613 GO:0004842|GO:0016567
Vvi1g1007 949 ProSiteProfiles U-box domain profile. 206 284 IPR003613 GO:0004842|GO:0016567
Vvi1g1007 949 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 164 946 - -
Vvi1g1007 949 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 163 - -
Vvi1g1007 949 SUPERFAMILY ARM repeat 299 642 IPR016024 -
Vvi1g1007 949 Gene3D - 745 945 IPR011989 -
Vvi1g1007 949 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 20 163 - -
Vvi1g1007 949 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 164 946 - -
Vvi1g1007 949 SMART Ubox_2 210 277 IPR003613 GO:0004842|GO:0016567
Vvi1g1007 949 Gene3D - 486 642 IPR011989 -
Vvi1g1007 949 SUPERFAMILY RING/U-box 198 287 - -
Vvi1g1007 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 265 IPR013083 -
Vvi1g1007 949 Gene3D - 266 473 IPR011989 -
Vvi1g1007 949 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 364 IPR000225 GO:0005515
Vvi1g1007 949 SUPERFAMILY ARM repeat 592 937 IPR016024 -
Vvi1g1007 949 Coils Coil 267 294 - -
Vvi1g1007 949 CDD RING-Ubox_PUB 211 257 IPR045210 -
Vvi1g1007 949 SMART arm_5 810 849 IPR000225 GO:0005515
Vvi1g1007 949 SMART arm_5 745 786 IPR000225 GO:0005515
Vvi1g1007 949 SMART arm_5 442 482 IPR000225 GO:0005515
Vvi1g1007 949 SMART arm_5 523 569 IPR000225 GO:0005515
Vvi1g1007 949 SMART arm_5 357 397 IPR000225 GO:0005515
Vvi1g1007 949 SMART arm_5 316 356 IPR000225 GO:0005515
Vvi1g1007 949 SMART arm_5 483 522 IPR000225 GO:0005515
Vvi1g1007 949 ProSiteProfiles HEAT repeat profile. 328 366 IPR021133 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1007 - - - vvi:100258226 1769.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29