Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g101 ATGCCAGTGGCGAAACCCGAATCGTCGGATGCGAGGATCATCGCTCACATCGACATGGACTGCTTCTATGTTCAAGTGGAGCAACGGAAGCAACCCGATTTGAGGGGTTTGCCTACCGCAGTGGTGCAGTACAACTCCTGGAAAGGCGGGGGCTTGATCGCTGTCAGCTATGAGGCGCGTAAATTTGGCGTCAAGCGTTCAATGCGAGGTGATGAGGCAAAGCAAGTATGCCCGCAAATTCAGCTGGTTCAGGTCCCAGTTGCCCGTGGTAAAGCGGACTTGAACGTATACCGCAATGCCGGTTCAGAGGTGGTTTCTATTCTTGCAAGGAAGGGGCGATGTGAGCGGGCTTCAATTGATGAAGTGTATCTTGATCTTACTGATGCGGCAGAAGCAATGCTAGCAGAAATGCCTCCTGAGAGCTTGGAAGCAATTGATGAAGAAGCTCTTAAGTCACATGTTTTGGGGCTTAATGAGGGTGGAAATGATATCAAAGAAAGTGTGAGGGTGTGGCTCTGCAGGAGTCAAGCAGATCACCGTGACAAGTTGTTAGCTTGTGGGGCCCTTATTGTTGCAGAACTTAGGATGCAAGTTTTTAGGGAGACTGAATTTACATGTTCTGCTGGCATTGCCCATAATAAGATGTTGGCCAAATTGGCAAGTGCCATGAATAAACCTGCTCAACAAACCATTGTGCCCCTCTCATGTGTAAGAGGATTGCTTGGTTCTTTGCCTATAAAGAAAATGAAACAGCTTGGAGGAAAGCTTGGGAGTTCCTTACAAAGTGATCTTGGTGTGAACACCGTTGGAGATCTCTTGCAGTTCTCAGAGGAGAAGCTTCAAGAATGTTATGGCATAAATACTGGTACTTGGTTATGGAATATTGCTAGAGGGATCAGTGGGGAAGAAGTTGAGAGTCGTCTGCTTTCTAAGAGCCATGGTTCTGGGAAGACATTTCCTGGCCCCAAGGCTCTGAAAACAATTGCTTCTGTTGAAAACTGGCTCAATGAACTTTGTGAAGAACTGGATGAACGACTCCGTTCTGACTTGGAGCAAAACAAGAGGATTGCACACACCCTCACGTTGCATGCTAGAGCATACAAGTCCAATGACTCGGATTCACATAAAAAATTCCCTTCTAAGTCATGTCCATTGAGGTATGGGATTGCCAAGATTCAAGAAGATGCCTTGAATTTATTTCAAGCTGGATTGCGTGAATATTTGGGATCGTGCAAAGTAAAGACTCGAGCAAATCAGTGCAGTGGATGGAGCATAACAGCTCTTTCTGTTTCTGCAAGTAAAATAGTTGCCATCCCAACTGGAACATGTTCAATCATGAAATACTTCCATGGCCAAGACCTGTCATCCTCTTCATTAAAGCAACCACAGGACAGGTCCACTGAAGAAGCTGCATCATTATCACATTCAGGAAGTGAGAGCTATCTGGGATTGAATCCCAGAGAAACACAAAAGCAGTTTCCTGGTGAAGAAACTAGGATAAATTATGATATGCCTAACCTGGATCAGCAGGAAAAGAAAAGAAAAATGTGGGAAGACCAGGGAACACCGTCAATCTTGAGATTCTTTAAGAGGCACAATCCCACTTCCTCTTTGTCTGAGCAAGAGCAAGTTGAACCCATCCAAGATACCAAAGTGTCATCATCCTCAGGTTTGTGGACTACAAGTGAGAGCTGTTCAGAAACAGGTCAAATTCAGCTGCCAAAAGAAATGATGGTTGCTGAAACTGAGTCCAATGCTAGACGCGATAGTTCAGCCGCCAAAAGAAATGATGGTTACAAGATTGATGACATCGACTGCTCTGTGATGGATGAGCTACCGCCAGAAATTCAAGAAGAAGTCCAAGCTCGGAGCTCAGAAGATCTAAATCAAGTTCAGCTGCCAAAAGAAATGATGGTTGCTGAAACTGAGTCCAATGCTAGACGCGATAGTTCAGCTGCCAAAAGAAATGATGGTTACAAGATTGATGACATCGACTGCTCTGTGATGGATGAGCTATCGCCAGAAATTCAAGAAGAAGTCCAAGCTTGGAGCTCAGAAGAACTAAATCAAGTTCAGCTGCCAAAAGAGACGATGGCTGCTGAGACTGGGCCTAACGATAGAAGGTGTAGTTTAGGCGGGGGTGCAGAAAGAAGGGAAACATGGAGTTACAAGATCGATGAGATTGACCCTTCTGTGATGGATGAGCTACCCCCAGAAATCCGAGCCGAAGTCCAAGCTTGGCTCCGGCCTCAGAAGCCGGCCAAGACAGGAAAACGAGGTTCTAGCATTGCCCACTATTTCTCACCTATGAAAAACAAATAG 2322 45.65 MPVAKPESSDARIIAHIDMDCFYVQVEQRKQPDLRGLPTAVVQYNSWKGGGLIAVSYEARKFGVKRSMRGDEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAEMPPESLEAIDEEALKSHVLGLNEGGNDIKESVRVWLCRSQADHRDKLLACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRGLLGSLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGISGEEVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHTLTLHARAYKSNDSDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQCSGWSITALSVSASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSGSESYLGLNPRETQKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNPTSSLSEQEQVEPIQDTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAKRNDGYKIDDIDCSVMDELPPEIQEEVQARSSEDLNQVQLPKEMMVAETESNARRDSSAAKRNDGYKIDDIDCSVMDELSPEIQEEVQAWSSEELNQVQLPKETMAAETGPNDRRCSLGGGAERRETWSYKIDEIDPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSPMKNK* 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1002539 1009582 - Vvi1g101 Vvi1g101 769301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g101 773 Pfam impB/mucB/samB family C-terminal domain 310 435 IPR017961 GO:0003684|GO:0006281
Vvi1g101 773 PANTHER DNA POLYMERASE ETA 5 703 - -
Vvi1g101 773 Pfam impB/mucB/samB family 17 221 IPR001126 GO:0006281
Vvi1g101 773 Gene3D - 304 437 IPR036775 GO:0003684|GO:0006281
Vvi1g101 773 Gene3D - 246 302 - -
Vvi1g101 773 Pfam Ubiquitin binding region 726 744 IPR025527 -
Vvi1g101 773 Pfam Ubiquitin binding region 604 620 IPR025527 -
Vvi1g101 773 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 309 437 IPR036775 GO:0003684|GO:0006281
Vvi1g101 773 MobiDBLite consensus disorder prediction 535 570 - -
Vvi1g101 773 Gene3D - 21 88 - -
Vvi1g101 773 MobiDBLite consensus disorder prediction 456 487 - -
Vvi1g101 773 SUPERFAMILY DNA/RNA polymerases 8 304 IPR043502 -
Vvi1g101 773 MobiDBLite consensus disorder prediction 456 504 - -
Vvi1g101 773 PANTHER DNA POLYMERASE ETA 5 703 - -
Vvi1g101 773 MobiDBLite consensus disorder prediction 695 714 - -
Vvi1g101 773 PIRSF DNA_pol_eta 6 754 - -
Vvi1g101 773 Gene3D - 89 232 IPR043128 -
Vvi1g101 773 ProSiteProfiles UmuC domain profile. 14 253 IPR001126 GO:0006281
Vvi1g101 773 MobiDBLite consensus disorder prediction 751 773 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g101 K03509 - vvi:100266192 1514.59