Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g101 ATGCCAGTGGCGAAACCCGAATCGTCGGATGCGAGGATCATCGCTCACATCGACATGGACTGCTTCTATGTTCAAGTGGAGCAACGGAAGCAACCCGATTTGAGGGGTTTGCCTACCGCAGTGGTGCAGTACAACTCCTGGAAAGGCGGGGGCTTGATCGCTGTCAGCTATGAGGCGCGTAAATTTGGCGTCAAGCGTTCAATGCGAGGTGATGAGGCAAAGCAAGTATGCCCGCAAATTCAGCTGGTTCAGGTCCCAGTTGCCCGTGGTAAAGCGGACTTGAACGTATACCGCAATGCCGGTTCAGAGGTGGTTTCTATTCTTGCAAGGAAGGGGCGATGTGAGCGGGCTTCAATTGATGAAGTGTATCTTGATCTTACTGATGCGGCAGAAGCAATGCTAGCAGAAATGCCTCCTGAGAGCTTGGAAGCAATTGATGAAGAAGCTCTTAAGTCACATGTTTTGGGGCTTAATGAGGGTGGAAATGATATCAAAGAAAGTGTGAGGGTGTGGCTCTGCAGGAGTCAAGCAGATCACCGTGACAAGTTGTTAGCTTGTGGGGCCCTTATTGTTGCAGAACTTAGGATGCAAGTTTTTAGGGAGACTGAATTTACATGTTCTGCTGGCATTGCCCATAATAAGATGTTGGCCAAATTGGCAAGTGCCATGAATAAACCTGCTCAACAAACCATTGTGCCCCTCTCATGTGTAAGAGGATTGCTTGGTTCTTTGCCTATAAAGAAAATGAAACAGCTTGGAGGAAAGCTTGGGAGTTCCTTACAAAGTGATCTTGGTGTGAACACCGTTGGAGATCTCTTGCAGTTCTCAGAGGAGAAGCTTCAAGAATGTTATGGCATAAATACTGGTACTTGGTTATGGAATATTGCTAGAGGGATCAGTGGGGAAGAAGTTGAGAGTCGTCTGCTTTCTAAGAGCCATGGTTCTGGGAAGACATTTCCTGGCCCCAAGGCTCTGAAAACAATTGCTTCTGTTGAAAACTGGCTCAATGAACTTTGTGAAGAACTGGATGAACGACTCCGTTCTGACTTGGAGCAAAACAAGAGGATTGCACACACCCTCACGTTGCATGCTAGAGCATACAAGTCCAATGACTCGGATTCACATAAAAAATTCCCTTCTAAGTCATGTCCATTGAGGTATGGGATTGCCAAGATTCAAGAAGATGCCTTGAATTTATTTCAAGCTGGATTGCGTGAATATTTGGGATCGTGCAAAGTAAAGACTCGAGCAAATCAGTGCAGTGGATGGAGCATAACAGCTCTTTCTGTTTCTGCAAGTAAAATAGTTGCCATCCCAACTGGAACATGTTCAATCATGAAATACTTCCATGGCCAAGACCTGTCATCCTCTTCATTAAAGCAACCACAGGACAGGTCCACTGAAGAAGCTGCATCATTATCACATTCAGGAAGTGAGAGCTATCTGGGATTGAATCCCAGAGAAACACAAAAGCAGTTTCCTGGTGAAGAAACTAGGATAAATTATGATATGCCTAACCTGGATCAGCAGGAAAAGAAAAGAAAAATGTGGGAAGACCAGGGAACACCGTCAATCTTGAGATTCTTTAAGAGGCACAATCCCACTTCCTCTTTGTCTGAGCAAGAGCAAGTTGAACCCATCCAAGATACCAAAGTGTCATCATCCTCAGGTTTGTGGACTACAAGTGAGAGCTGTTCAGAAACAGGTCAAATTCAGCTGCCAAAAGAAATGATGGTTGCTGAAACTGAGTCCAATGCTAGACGCGATAGTTCAGCCGCCAAAAGAAATGATGGTTACAAGATTGATGACATCGACTGCTCTGTGATGGATGAGCTACCGCCAGAAATTCAAGAAGAAGTCCAAGCTCGGAGCTCAGAAGATCTAAATCAAGTTCAGCTGCCAAAAGAAATGATGGTTGCTGAAACTGAGTCCAATGCTAGACGCGATAGTTCAGCTGCCAAAAGAAATGATGGTTACAAGATTGATGACATCGACTGCTCTGTGATGGATGAGCTATCGCCAGAAATTCAAGAAGAAGTCCAAGCTTGGAGCTCAGAAGAACTAAATCAAGTTCAGCTGCCAAAAGAGACGATGGCTGCTGAGACTGGGCCTAACGATAGAAGGTGTAGTTTAGGCGGGGGTGCAGAAAGAAGGGAAACATGGAGTTACAAGATCGATGAGATTGACCCTTCTGTGATGGATGAGCTACCCCCAGAAATCCGAGCCGAAGTCCAAGCTTGGCTCCGGCCTCAGAAGCCGGCCAAGACAGGAAAACGAGGTTCTAGCATTGCCCACTATTTCTCACCTATGAAAAACAAATAG 2322 45.65 MPVAKPESSDARIIAHIDMDCFYVQVEQRKQPDLRGLPTAVVQYNSWKGGGLIAVSYEARKFGVKRSMRGDEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAEMPPESLEAIDEEALKSHVLGLNEGGNDIKESVRVWLCRSQADHRDKLLACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRGLLGSLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGISGEEVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHTLTLHARAYKSNDSDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQCSGWSITALSVSASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSGSESYLGLNPRETQKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNPTSSLSEQEQVEPIQDTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAKRNDGYKIDDIDCSVMDELPPEIQEEVQARSSEDLNQVQLPKEMMVAETESNARRDSSAAKRNDGYKIDDIDCSVMDELSPEIQEEVQAWSSEELNQVQLPKETMAAETGPNDRRCSLGGGAERRETWSYKIDEIDPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSPMKNK* 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1002539 1009582 - Vvi1g101 Vvi1g101 769301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g101 773 Pfam impB/mucB/samB family C-terminal domain 310 435 IPR017961 GO:0003684|GO:0006281
Vvi1g101 773 PANTHER DNA POLYMERASE ETA 5 703 - -
Vvi1g101 773 Pfam impB/mucB/samB family 17 221 IPR001126 GO:0006281
Vvi1g101 773 Gene3D - 304 437 IPR036775 GO:0003684|GO:0006281
Vvi1g101 773 Gene3D - 246 302 - -
Vvi1g101 773 Pfam Ubiquitin binding region 726 744 IPR025527 -
Vvi1g101 773 Pfam Ubiquitin binding region 604 620 IPR025527 -
Vvi1g101 773 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 309 437 IPR036775 GO:0003684|GO:0006281
Vvi1g101 773 MobiDBLite consensus disorder prediction 535 570 - -
Vvi1g101 773 Gene3D - 21 88 - -
Vvi1g101 773 MobiDBLite consensus disorder prediction 456 487 - -
Vvi1g101 773 SUPERFAMILY DNA/RNA polymerases 8 304 IPR043502 -
Vvi1g101 773 MobiDBLite consensus disorder prediction 456 504 - -
Vvi1g101 773 PANTHER DNA POLYMERASE ETA 5 703 - -
Vvi1g101 773 MobiDBLite consensus disorder prediction 695 714 - -
Vvi1g101 773 PIRSF DNA_pol_eta 6 754 - -
Vvi1g101 773 Gene3D - 89 232 IPR043128 -
Vvi1g101 773 ProSiteProfiles UmuC domain profile. 14 253 IPR001126 GO:0006281
Vvi1g101 773 MobiDBLite consensus disorder prediction 751 773 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g101 K03509 POLH; DNA polymerase eta [EC:2.7.7.7] - vvi:100266192 1514.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002703 1 1 0 2 3 1 4 2 1 2 1 1 1 2 2 2 1 1 2 1 2 2 2 2 2 1 2 1 4 2 51