Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1010 ATGGATATGAGTGACAAGGATAAATTTGAGCTAGAAAAGAGGAGTGGTGATTCTTTGAACTACCATTCAGCTAGTATGTCATCGGACTGGCGTTTCGGTGGCGTCTGCAAAGGGGATCTAGTTGGCTCTTCTTCATGTTCCTCGGCTTCCATGGTAGACTCATTTGGCCCAAACCTCTGGGACCATCCTGCCAATTCACAAACCTTAGGCTTTTGTGACATGAATGTCCAGAACAATGCAAGCACATCAAGCACACTAGGAATTAGAAAAGGGGGTCCAGGTTCTTTGAGAATGGATATTGATAAAACACTTGACATTGGTTGGAATCCACCGAGTTCGATGCTGAAAGGGGGTATCTTCTTACCGAATGCCCCTGGAATGCTCCCTCAGGGCTTGTCACAGTTTCCCGCTGATTCTGGTTTCATTGAGCGAGCAGCGAGGTTCTCATGCTTCAATGGAGGTAATTTTAGCGATATGATGAACCCTTTTAGCATTCCTGAATCTTTGAATCCTTATTCTAGAGGTGGGGGAATGCTGCAACAAGATGTTTTTGCAAGCAATGGGTTGAAATCAGTACCTGGAGGGCAATCTCAAAAGGATGAGCCAAGCATGGCTGAAATTTCAAAAGATGTTTCTTCGGCTAAGCAAAACAAGGAATTGGGGTGTGGTGAACCTTCTTCTGGCAAGGGCCTTGGCTCGAAGAAAAGGAAAAGAAGTGGTCAGGACCCAGAGATTGATCAAGTCAAGGGAAGCCCACAGCAACCCGGAGAAGCTTCAAAGGATAACCCTGAAATTCAACATAAGGGAGACCAAAACCCAAGTTCAGTTCCCAGTAAGAACACTGGAAAACACGGTAAGCAGGGGGCACAAGCTTCAGATCCACCAAAGGAAGAATATATTCATGTCAGAGCACGGAGAGGTCAGGCAACAAACAGCCATAGTCTTGCAGAAAGAGTAAGAAGGGAAAAGATCAGTGAAAGGATGAAGTTTCTTCAAGACCTGGTACCTGGTTGCAGCAAGGTCACTGGCAAGGCGGTCATGCTAGATGAAATCATTAACTATGTGCAATCACTTCAACGGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACCGTTAATCCGCGGCTGGATTTTAATATTGAAGGCATGCTTGGAAAAGATATCCTTCAATCAAGAGTAGGTCCTTCATCTACAATGGGTTTTTCGCCAGAAACAACTATGCCTTATCCTCAGCTACATCCATCTCAACCAGGATTGATTCAAGTAGGTCTTCCTGGCTTGGGGAACTCTTCTGATGCAATTAGGAGAACTATTAATTCCCAATTGGCGGCCATGAGTGGAGGGTACAAGGAGTCAGCACCCCAGCTACCTAATGTATGGGAGGATGAACTCCACAATGTTGTTCAAATGGGCTTTAGTACTGGTGCTCCCCTCAACAGCCAAGATTTAAATGGGTCTCTACCACCTGGCCATATGAAAGCTGAACTTTAA 1491 45.2 MDMSDKDKFELEKRSGDSLNYHSASMSSDWRFGGVCKGDLVGSSSCSSASMVDSFGPNLWDHPANSQTLGFCDMNVQNNASTSSTLGIRKGGPGSLRMDIDKTLDIGWNPPSSMLKGGIFLPNAPGMLPQGLSQFPADSGFIERAARFSCFNGGNFSDMMNPFSIPESLNPYSRGGGMLQQDVFASNGLKSVPGGQSQKDEPSMAEISKDVSSAKQNKELGCGEPSSGKGLGSKKRKRSGQDPEIDQVKGSPQQPGEASKDNPEIQHKGDQNPSSVPSKNTGKHGKQGAQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGMLGKDILQSRVGPSSTMGFSPETTMPYPQLHPSQPGLIQVGLPGLGNSSDAIRRTINSQLAAMSGGYKESAPQLPNVWEDELHNVVQMGFSTGAPLNSQDLNGSLPPGHMKAEL* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15902529 15907102 - Vvi1g1010 Vvi1g1010 770210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1010 496 MobiDBLite consensus disorder prediction 187 202 - -
Vvi1g1010 496 Gene3D - 305 378 IPR036638 GO:0046983
Vvi1g1010 496 CDD bHLH_AtBPE_like 298 381 - -
Vvi1g1010 496 MobiDBLite consensus disorder prediction 246 260 - -
Vvi1g1010 496 MobiDBLite consensus disorder prediction 187 295 - -
Vvi1g1010 496 Pfam Helix-loop-helix DNA-binding domain 311 359 IPR011598 GO:0046983
Vvi1g1010 496 SMART finulus 314 364 IPR011598 GO:0046983
Vvi1g1010 496 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 358 IPR011598 GO:0046983
Vvi1g1010 496 PANTHER TRANSCRIPTION FACTOR BHLH49 34 209 - -
Vvi1g1010 496 PANTHER TRANSCRIPTION FACTOR BHLH49 221 495 - -
Vvi1g1010 496 MobiDBLite consensus disorder prediction 268 287 - -
Vvi1g1010 496 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 34 209 IPR024097 GO:0006355
Vvi1g1010 496 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 221 495 IPR024097 GO:0006355
Vvi1g1010 496 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 377 IPR036638 GO:0046983
Vvi1g1010 496 MobiDBLite consensus disorder prediction 475 496 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14452 PF00010 HLH 6.20E-06 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1010 - - vvi:100265116 929.858