Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1015 ATGAAAGAACTAGCACATTCTAAACCTTCACTCTTTCCTCATCATTTTCCCACTTTTCTTCCACTAATGCCAATGCTTGGAAGTATAGTACTTTGTGTGATTGGAGATGTTTCTTTCCTTTATGATACAAATGGATTATCAATTTTAAGCCAAAGGATGCGGCGGAAACCGATGACAATTCTTGTATTAAACAATCATGGTGGGGCAATCTTTAGTCTCCTTCCTATTGCAGAGAGAACTGAGCGAAGAGTTTTGGATCAATATTTCTACACCTCTCACAATGTTTCTATTGGCAAGCTTTGTTTGGCGCATGGAATATTGCTTTTATTTCGTAAAAATTTTCACCTTCTCATAATATCCTTTGTAGTATTAATTATTAATGATGGATTAGTTATTTTACTTTATGGTGATGTCATTTTAGTTGACGAGCATTATTTTAATATGAAGCATTTAGAAGTGCGGACAAAAATAGAACTTCAAGATGCTCTATTTACATCTCAACAGGAAAATAGGGACTGTGTCATAGAAGTTGAGAGCTGCATTGATTCCAATGCTGCCTTCCACAGTACATTGAGAAAATTTGCATGCCAAGCAGCAGACCATGCTTTAAATATGCTTTCTAAGTTCTCAATTCCAGATTTCATCTTCCATGGTTCCTTTCTTTGCAAGATCCATGGCATGGAATACTCAATATATAGAATTCCTCTATGTGCTCCACCAACTTCTGCTTCTGTCAATTATAAAACTACCACGTTTTATAGAGATGGCTTCATTTTAATTCTTTCTCTTGAGGGTGGACATGTGGGATTTGGTGAGGTTGCACCTCTTGAAATCCATGAAGAAGATTTGCTAGATGTAGAGGAGCAACTTCGATTTCTTCATCATGTGATTAAAGGAGCCAAAATAAGTTTCTATCTGCCTCTATTAAAGGGCTCGTTTTCTTCTTGGATTTGGAGCTGCTTGGGTATCCCGCCATCTTCAATCTTCCCAAGTGTCAGATGCGGTTTGGAGATGGCCATCCTAAATGCTATAGCTGCACAGGAAGGCTCAAGTTTATTAAACATTCTGCATCCCTATAAAGTTGAAGAAGAAATATCTGAAAGGTCAAAAAGAGTTCAGATTTGTGCCCTTCTTGATTCTAATGGGTCTCCCTTGGAGGTTGCTTATCTTGCCAAGACACTTGTTGAAGAAGGTTTTACTGCTATAAAGCTAAAAGTAGCACGTCGGGCAGATCCAATTGAAGATGCTACAGTCATACAAGAAATAAGAAAGATGGTTGGACTACAGATCGAGCTTCGTGCTGATGCCAACCGAAACTGGACTTATGAACAAGCAATTCAGTTTAGCTCTTATGTTAAAAATTGTGATCTGAAGTACATTGAGGAACCTGTCAAGGATGAAGATGATATTATTAAGTTCTGTGAAGAAACTGGCTTACCAGTAGCATTGGATGAAACCATGGACAAAATTGGAGAAACTCCTCTTCAAAAGCTTGCAAAGTTCTCACACTCAGGAATAGTTGCTGTTGTTATCAAACCAAGTGTTGTTGGTGGTTTTGAAAATGCTGCATTGATTGCTCGATGGGCCCAGCAACAGGGTAAGATGGCTGTTGTCAGTGCAGCATTTGAAAGTGGGCTTAGTTTGTCAGCATATATTCAGTTGTCTAGTTATTTTGAGCTGCAAAGTGCAGAGATATGCAAATTGATGAATAAGCAACTGGTTCCATCTGTAGCCCATGGTCTTGGAACCTACCGATGGCTTAAAGAAGATGTAACTTTTGAACCTCTCAGCATTAATCGTAGTCAGGACAGTGGCTTTATAGAAGCATCTGTTGTTGATGCTGATCGAATCCTGCAGAAATTTCAGATCAACCGAGATACTATCATAAGAATTTTTTCTGAGGAACAAGTTTACACTCATCAGTTGGCTGTGGATTCAGATGGCTTCTCGTGCTTGTTGAATGTTCATGAGATTGGAGCAAGCATTGAGAATGATGTAGTTGTATTTCTTCATGGGTTCCTTGGAACTGGTGGAGACTGGATTGCCACTATGAAAGCCATCTCAGGATCTGCTAGATGCATTTCAATCGACCTTCCAGGCCATGGGGGGTCAAAGATACAAAATCATGATGGAAAAGAGGATGTGCTAGAACCAAATTTGTCGATTGAGGTAGTTGCAGATGTATTATATAAGTTGATTCATTCTATTACTCCTGGAAAAGTTACCCTTGTGGGTTATTCAATGGGTGCAAGGATTGCTTTGTACATGGCTCTGACTTCAAGCTTTAGTGATAAGATCAAAGGCGCTGTTATTATATCTGGAAGCCCTGGACTAAAGAATGATGAAGCCAGAAAAATTCGCATGGTTAAAGATGATTCCAGATCACATGCCCTCATCACTCATGGCTTACAAATCTTTCTAGAAAGCTGGTACTCTGGAGAGCTGTGGAAGAGCTTAAGAGGTCATCCCCAGTTTAATCAAATAGTTGCCAGCCGTCTGCAGCATAAAGATGTACGGAGTCTAGCCAAAACTCTCTCTGATTTGAGCATTGGGAGGCAGCGGCCATTATGGGAGGACTTGAGGCAATGCAGTACACCTCTTTTGCTCATTGTTGGAGAGAAGGATGGGAAGTTCAAGAGGATTGCTCAGGAAATGTGCTATGAAATTGGTCATGGTACGAGTAATGGAGATGACTCCAGGAAAGAGATTTATGAAATAGTTGAGGTTCCCAACTGTGGGCATGCTGCCCACCTAGAGAATCCTCTCCCTATAATCCGTGCACTGAGAAGATTTTTGACAGGACTAGAAAACAGTTCAACACCAAATGAAAGAGCTGTTCCCTTTCATGGGTCATGA 2856 40.06 MKELAHSKPSLFPHHFPTFLPLMPMLGSIVLCVIGDVSFLYDTNGLSILSQRMRRKPMTILVLNNHGGAIFSLLPIAERTERRVLDQYFYTSHNVSIGKLCLAHGILLLFRKNFHLLIISFVVLIINDGLVILLYGDVILVDEHYFNMKHLEVRTKIELQDALFTSQQENRDCVIEVESCIDSNAAFHSTLRKFACQAADHALNMLSKFSIPDFIFHGSFLCKIHGMEYSIYRIPLCAPPTSASVNYKTTTFYRDGFILILSLEGGHVGFGEVAPLEIHEEDLLDVEEQLRFLHHVIKGAKISFYLPLLKGSFSSWIWSCLGIPPSSIFPSVRCGLEMAILNAIAAQEGSSLLNILHPYKVEEEISERSKRVQICALLDSNGSPLEVAYLAKTLVEEGFTAIKLKVARRADPIEDATVIQEIRKMVGLQIELRADANRNWTYEQAIQFSSYVKNCDLKYIEEPVKDEDDIIKFCEETGLPVALDETMDKIGETPLQKLAKFSHSGIVAVVIKPSVVGGFENAALIARWAQQQGKMAVVSAAFESGLSLSAYIQLSSYFELQSAEICKLMNKQLVPSVAHGLGTYRWLKEDVTFEPLSINRSQDSGFIEASVVDADRILQKFQINRDTIIRIFSEEQVYTHQLAVDSDGFSCLLNVHEIGASIENDVVVFLHGFLGTGGDWIATMKAISGSARCISIDLPGHGGSKIQNHDGKEDVLEPNLSIEVVADVLYKLIHSITPGKVTLVGYSMGARIALYMALTSSFSDKIKGAVIISGSPGLKNDEARKIRMVKDDSRSHALITHGLQIFLESWYSGELWKSLRGHPQFNQIVASRLQHKDVRSLAKTLSDLSIGRQRPLWEDLRQCSTPLLLIVGEKDGKFKRIAQEMCYEIGHGTSNGDDSRKEIYEIVEVPNCGHAAHLENPLPIIRALRRFLTGLENSSTPNERAVPFHGS* 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16157068 16202539 - Vvi1g1015 Vvi1g1015 770215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1015 951 SMART MR_MLE_2 384 480 IPR013342 -
Vvi1g1015 951 SFLD o-succinylbenzoate synthase 228 602 - -
Vvi1g1015 951 Pfam alpha/beta hydrolase fold 666 921 IPR000073 -
Vvi1g1015 951 Gene3D alpha/beta hydrolase 660 933 IPR029058 -
Vvi1g1015 951 PANTHER - 144 856 - -
Vvi1g1015 951 SUPERFAMILY Enolase N-terminal domain-like 223 356 IPR029017 -
Vvi1g1015 951 TIGRFAM menC_gamma/gm+: o-succinylbenzoate synthase 253 560 - -
Vvi1g1015 951 PANTHER O-SUCCINYLBENZOATE SYNTHASE-RELATED 144 856 - -
Vvi1g1015 951 SFLD muconate cycloisomerase 228 602 - -
Vvi1g1015 951 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 27 107 IPR029061 -
Vvi1g1015 951 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 432 463 IPR018110 GO:0009063
Vvi1g1015 951 Gene3D - 226 363 IPR029017 -
Vvi1g1015 951 Pfam Enolase C-terminal domain-like 391 558 IPR029065 -
Vvi1g1015 951 SUPERFAMILY alpha/beta-Hydrolases 663 934 IPR029058 -
Vvi1g1015 951 Gene3D - 23 109 - -
Vvi1g1015 951 SUPERFAMILY Enolase C-terminal domain-like 378 600 IPR036849 -
Vvi1g1015 951 Gene3D - 364 604 IPR036849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1015 K14759 PHYLLO; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113] - vvi:100241089 1727.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1015 . . . . . . . . Cmo04g01639 . . . . . . . . Bhi07g01426 . . . . . . . . . . . . . . . . . . Csa05g02543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37