Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1016 ATGATCGTATTTGTATATGATGTTTCATCTATCCACTTTTTTCCTCACTCATCATCTGACTGTTTTTACTTCCTCTATTTTAAGGAGACTCCATTTTCCTGTCAGTTCTGCATCAGGCTTTCACCCACTGTTACTGCTGCTAGCAACATGTTGGATCATTCCGGTGAAAGGACTTTTTCTTCACAAGACTATGCTAACATCAATGCCTTGTGGGCATCTCTCATAATTGAAGAATGCACGCGGTTTGGTTTGATGTATTTTTGTGTAGCTCCAGGATCAAGATCATCTCCCCTTGCTATTGCTGCTTCCACTCATCCCCTTACAACTTGTATCGCATGCTTTGATGAACGCTCTCTTGCATTTCATGCTCTTGGTTATGCAAGAGGATCTCATAAACCAGCAGTGGTCATAACATCATCGGGCACTGCAGTATCAAATCTTCTTCCTGCTGTTGTTGAGTCTAGTCAAGGTTTTGTACCTCTTCTATTACTTACTGCAGATCGTCCTCCAGAGCTGCATGATGCTGGAGCTAACCAGGCAATTAATCAGGTCAATCATTTTGGTTCCTTTGTGAGGTTTTTCTTTGGTCTTCCTGTTCCCACTGATCATATTCCTGCTCGGATGATACTTACCACACTTGACTCTGCTGTTTATTGGGCAACATCTTCACCATGTGGCCCTGTTCATATAAACTGTCCTTTTAGAGAGCCCCTGGAAAATAGTCCAAAAGAATGGATGTTAAGCTGTTTAAAAGGATTAGATTCTTGGATGTCAAGTGCTGAACCTTTTACCAAGTATATTCAGTTGCAGCATTCCCATGCACCTGATGATTCTCAAGGTCAAATGGCAGAGGTTATAGAAGTGATTCAAGGGGCTAAACGAGGTCTTTTACTTATAGGTGCGATCACTACAGAGGATGATATTTGGGCAGCTCTTCTCCTGGCTAAGCACCTTTGTTGGCCAGTTGTAGCTGACATCTTGTCAGGTTTACGGTTGAGAAAGCTTTCTACTTCTTTTCAAGAAATTGAAGACAATGTTTTATTTCTTGATCATCTTGATCATGCTTTACTCTCAGATTTTGTCAGGGTTTGGGCACAAGCTGATGTCATTATTCAGATTGGGAGTAGAATAACGAGTAAACGTATATCTCAGATGATAGAGGATTGTTTTCCATGCTCATATATCATGGTTGACAAGCATCCATGTCGCCATGATCCTTCACATCTCTTAACACATAGGATCCAGAGTACCATCACTCAGTTTGCTGATTGCTTATGTAAAGCTCAGTTTCCACTTATGAGCAGCAAATGGAGTGTGTCTTTGCGGGCATTGGATATGATGGTTGCACAGGAGATATCATCTTTGATACATTCTGAAAGTTTCTTGACTGAACCTTATGTTGCACATGTAATTTTGGAAGCACTTACCTGTGACTCTGCCTTATTTATTGGGAACAGCATGGCAATACGTGATGCAGATATGTATGCGCGAAATTCGGCTGACTGTACTCATAGGATTGGAGATACAGTTTTGAGCTTAGGACTACCATTTCACTGGATACGGGTGTCTGGAAACAGGGGAGCCAGTGGTATTGATGGTTTGCTGAGTACTGCTATTGGTTTTGCTGTGGGATGCAATAAACGATGTGGTGACTGGCAAGAGGGTGGCTATGACAAGTTCAAGGCTGGTGGTGGCTTTCATGAGCGGCTACAAGGGTTTTTTATGAACAAGATGAGTTTTTTCCTTCTTTTCAAGATGGTGATGATTTTCGACTTCCACAAAGGAGGAATATTCAACAAAGGCAGCAATGGAGGTTGGATTATTCATCAAGAGAAGAAAATGATTTCTATTTCAACTATCGGGCTAACAATCGGGGTCAAAATAACCAAGAATTTAAGATGA 1902 41.38 MIVFVYDVSSIHFFPHSSSDCFYFLYFKETPFSCQFCIRLSPTVTAASNMLDHSGERTFSSQDYANINALWASLIIEECTRFGLMYFCVAPGSRSSPLAIAASTHPLTTCIACFDERSLAFHALGYARGSHKPAVVITSSGTAVSNLLPAVVESSQGFVPLLLLTADRPPELHDAGANQAINQVNHFGSFVRFFFGLPVPTDHIPARMILTTLDSAVYWATSSPCGPVHINCPFREPLENSPKEWMLSCLKGLDSWMSSAEPFTKYIQLQHSHAPDDSQGQMAEVIEVIQGAKRGLLLIGAITTEDDIWAALLLAKHLCWPVVADILSGLRLRKLSTSFQEIEDNVLFLDHLDHALLSDFVRVWAQADVIIQIGSRITSKRISQMIEDCFPCSYIMVDKHPCRHDPSHLLTHRIQSTITQFADCLCKAQFPLMSSKWSVSLRALDMMVAQEISSLIHSESFLTEPYVAHVILEALTCDSALFIGNSMAIRDADMYARNSADCTHRIGDTVLSLGLPFHWIRVSGNRGASGIDGLLSTAIGFAVGCNKRCGDWQEGGYDKFKAGGGFHERLQGFFMNKMSFFLLFKMVMIFDFHKGGIFNKGSNGGWIIHQEKKMISISTIGLTIGVKITKNLR* 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16211716 16268751 - Vvi1g1016 Vvi1g1016 770216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1016 633 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 65 628 IPR004433 GO:0009234|GO:0030976|GO:0070204
Vvi1g1016 633 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 64 245 IPR029061 -
Vvi1g1016 633 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 29 599 IPR004433 GO:0009234|GO:0030976|GO:0070204
Vvi1g1016 633 Gene3D - 63 260 - -
Vvi1g1016 633 Gene3D - 275 457 - -
Vvi1g1016 633 SUPERFAMILY DHS-like NAD/FAD-binding domain 227 437 IPR029035 -
Vvi1g1016 633 CDD TPP_PYR_MenD 73 234 - -
Vvi1g1016 633 TIGRFAM menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 71 543 IPR004433 GO:0009234|GO:0030976|GO:0070204
Vvi1g1016 633 Pfam Middle domain of thiamine pyrophosphate 250 483 IPR032264 -
Vvi1g1016 633 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 73 241 IPR012001 GO:0030976
Vvi1g1016 633 Gene3D - 460 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1016 K14759 PHYLLO; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113] - vvi:100241089 1055.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1016 . . . . . . . . Cmo04g01638 . . . Car04g01619 . . . Cpe01g01391 Bhi07g01424 . . . . . . Cla05g02365 Cam05g2535 Cec05g2564 Cco05g2603 Clacu05g2531 Cmu05g2391 Cre05g2507 . . . . Lsi04g00326 . Chy10g01084 Cme10g00326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37