Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g102 ATGAAGAGAAGAGAGAGAGAAGATCATCACCATAGCAATACTGCACTTAGAAAGGGCACTTGGAGTGAAGAAGAGGATCGCTTGCTCAGAGAATATGTAGACAAGTATGGTCAAGGCAACTGGAAGCACATCACTTCCAAAACAGGGCTTCGCCGTTGCCGGAAGAGTTGCAGGTTAAGATGGTTGAACTATCTTCGACCAGACATCAAGCGCGGCAGCTTTGGAGTTGATGAGGATGATCTGATTATCAGACTCCATAGACTCTTGGGCAACAGATGGACTCTAATTGCAGGAAGGATTCCAGGAAGAACATCCAATGACATTAAAAACTATTGGAACACTTACTTGAGCAAGAAGATTCAATCAGAAGCCGACAAAAGTGCAGGCTTGGTGAAACATAACACCTGTACTTCAGCCGTGCATTCTGAGACATTGGGAAGTGAGTTTGAGACCTGCTCAGAACAAAAACAAGGAGATGAGGAAGAAGAAGATACAGTATCATTCTGGAGGAGACTTTTGTTAGAGGGAGAATATAGGGAACTTGATTTGAGAGTGAAAAACAAAGAGATATTGCAGGTTGAACACGAAGAAGAAGATGATGACGACTTGTTTCAGGGGCTGGATGATTTGCTTCATGATGTGGACATTTTAGATTGCTTTGCTTAA 666 42.79 MKRREREDHHHSNTALRKGTWSEEEDRLLREYVDKYGQGNWKHITSKTGLRRCRKSCRLRWLNYLRPDIKRGSFGVDEDDLIIRLHRLLGNRWTLIAGRIPGRTSNDIKNYWNTYLSKKIQSEADKSAGLVKHNTCTSAVHSETLGSEFETCSEQKQGDEEEEDTVSFWRRLLLEGEYRELDLRVKNKEILQVEHEEEDDDDLFQGLDDLLHDVDILDCFA* 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1017873 1019921 + Vvi1g102 Vvi1g102 769302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g102 221 Gene3D - 73 140 - -
Vvi1g102 221 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Vvi1g102 221 CDD SANT 20 65 IPR001005 -
Vvi1g102 221 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Vvi1g102 221 Gene3D - 18 70 - -
Vvi1g102 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 69 IPR017930 -
Vvi1g102 221 CDD SANT 77 116 IPR001005 -
Vvi1g102 221 SMART sant 17 67 IPR001005 -
Vvi1g102 221 SMART sant 70 118 IPR001005 -
Vvi1g102 221 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Vvi1g102 221 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Vvi1g102 221 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Vvi1g102 221 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 220 - -
Vvi1g102 221 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 11 220 - -
Vvi1g102 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14453 PF00249 Myb_DNA-binding 1.10E-15 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g102 K09422 - vvi:109121493 429.098