Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1020 ATGGCCAAGGAGCTTTACTTCAACCATGATGGTTCAGCCACAAAGAAACTTCAGGCAGGGGTGGACATGGTGGCGGAACTGGTTGGTGTGACTTTAGGACCAAAAGGAAGGAATGTTGTGTTGCAGAACAAGTATGGGCCTCCCAAGATTGTTAACGATGGCGAGACTGTGCTCAAAGAGATTGAGCTGGAGGATCCATTGGAGAATGTTGGGGTGAAATTGGTTAGACAAGCTGGCGCAAAAACGAATCACCTTGCTGGTGATGGTTCCACTACATCTGTTATACTTGCACGAGGTCTAATTGCTGAGGGTGTGAAGGTAATTGCAGCAGGAATGAACCCCATTCAAATTTCTCGTGGGATTGAGAAGACTGCAATGGCCCTTGTTTCTGAACTCAAATTGATGTCGAGAGAGGTTGAGGATCATGAGCTTGCACATGTTGCTGCAGTTAGTGCTGGGAATGATTATACAGTGGGCAACATGATTTCTGATGCTATTCGACAGGTAGGAAGGAGGGGTGTGATCACAATTGAGAAAGGGAAATGTGCTGAAAATAGTCTGCAGATTGTAGAAGGAATGCAATTCGATCGTGGATACTTGTCCCCTTACTTTGTTACTGATCGACAAAAGATGATGGTGGAGTTCCATGATTGCAAGTTACTTTTGGTCGACAAAAAAATCACGAACCCGAAGGAGATGTTTAAAATATTGGACAATGCAGTTAAGGAGAAGTATCCAATTGTGATAGTTGCAGAGGGCATTGAGCAAGAAGCTCTGGCTCCGGTAATTAGAAACAAACTCAGGGGTGTGCTGAAGGCAGCTGCTATTAAGGCTCCTGCCTTTGGTGAGCGGAAGAGCCACTACTTAGATGACCTTGCTATCTTGACTGGAGGCACTGTAATTAGCGATGAGATGGGATTGACCCTGGAAAAGGCTGGCAAGGAGGTCTTGGGCACTGCTACTAAGGTGGTCATAACTAAGGATTCTACGTTAATAGTTACAGATGGGAGCACTCAACCAGCTGTTGAGAAGAGGGTTTCTCAGATTCGGGGGCTTGTTGAGAACACTGAAGAAAATTTCCAAAAGAAGATACTGAATGAAAGAATAGCAAGGTTATCAGGAGGAATTGCTATTCTTCAGGTCGGAGCTCAAACACAAGTTGAGCTGAAAGATAAACAATTGAGGATTGAAGATGCTGTGAATGCAACTAAGGCAGCTATTGAGGAAGGTGTTGTAGTTGGTGGTGGCTGTAGCCTTTTGCGACTATCTTTAAAAGTGGATGGCATCAAAGAACTTTTGGACAATGAAGAGCAGAAAATTGGAGCTGAGATCTTCAAAAGAGCTTTGACCTATCCTGCAAGACTGATTGCCAAAAATGCAGGTGTTAATGACAGTGTTGTAATAGAGAAGGTTTTATCTAATGATGATTTTCGATATGGTTATAATGCTGCAATAGACTGTTATGAGGATTTGATGGCTGCTGGAATTATGGATCCATCAAAGGTGGTTAGATGTTGTCTAGAGCATGCTGCTTCGGTTGCCAAAACCTTTTTGACATCAGACGCTGTTGTTGTTGACATTAAGGAATTAGACCTCATTCCAAGGAGAAAACCGATGCCACCAATGTCACCAATGCCACCAGTATCACCATTGCCATCCCCAGGTAACTCAGCCATTTCAAGGAGAAAACCAATGCCACGGATGCCACTATTACCACCACTGCCAACCTCAGGTATTCGACCAATTGGGCTTTAG 1755 44.05 MAKELYFNHDGSATKKLQAGVDMVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNHLAGDGSTTSVILARGLIAEGVKVIAAGMNPIQISRGIEKTAMALVSELKLMSREVEDHELAHVAAVSAGNDYTVGNMISDAIRQVGRRGVITIEKGKCAENSLQIVEGMQFDRGYLSPYFVTDRQKMMVEFHDCKLLLVDKKITNPKEMFKILDNAVKEKYPIVIVAEGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDLAILTGGTVISDEMGLTLEKAGKEVLGTATKVVITKDSTLIVTDGSTQPAVEKRVSQIRGLVENTEENFQKKILNERIARLSGGIAILQVGAQTQVELKDKQLRIEDAVNATKAAIEEGVVVGGGCSLLRLSLKVDGIKELLDNEEQKIGAEIFKRALTYPARLIAKNAGVNDSVVIEKVLSNDDFRYGYNAAIDCYEDLMAAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKELDLIPRRKPMPPMSPMPPVSPLPSPGNSAISRRKPMPRMPLLPPLPTSGIRPIGL* 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16384422 16391085 + Vvi1g1020 Vvi1g1020 770220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1020 584 Coils Coil 419 439 - -
Vvi1g1020 584 SUPERFAMILY GroEL equatorial domain-like 10 524 IPR027413 -
Vvi1g1020 584 Gene3D - 10 525 IPR027413 -
Vvi1g1020 584 SUPERFAMILY GroEL-intermediate domain like 142 205 IPR027410 -
Vvi1g1020 584 MobiDBLite consensus disorder prediction 535 584 - -
Vvi1g1020 584 Gene3D GroEL 192 373 IPR027409 -
Vvi1g1020 584 Gene3D - 138 410 IPR027410 -
Vvi1g1020 584 MobiDBLite consensus disorder prediction 537 553 - -
Vvi1g1020 584 SUPERFAMILY GroEL apical domain-like 184 376 IPR027409 -
Vvi1g1020 584 TIGRFAM GroEL: chaperonin GroL 2 529 IPR001844 GO:0042026|GO:0140662
Vvi1g1020 584 Pfam TCP-1/cpn60 chaperonin family 24 527 IPR002423 GO:0005524
Vvi1g1020 584 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 1 536 - -
Vvi1g1020 584 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 536 - -
Vvi1g1020 584 PRINTS 60kDa chaperonin signature 28 54 IPR001844 GO:0042026|GO:0140662
Vvi1g1020 584 PRINTS 60kDa chaperonin signature 84 111 IPR001844 GO:0042026|GO:0140662
Vvi1g1020 584 PRINTS 60kDa chaperonin signature 268 291 IPR001844 GO:0042026|GO:0140662
Vvi1g1020 584 PRINTS 60kDa chaperonin signature 350 375 IPR001844 GO:0042026|GO:0140662
Vvi1g1020 584 PRINTS 60kDa chaperonin signature 398 419 IPR001844 GO:0042026|GO:0140662
Vvi1g1020 584 ProSitePatterns Chaperonins cpn60 signature. 405 416 IPR018370 GO:0005524|GO:0006457
Vvi1g1020 584 CDD GroEL 3 526 IPR001844 GO:0042026|GO:0140662
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1020 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - vvi:100251252 1073.92
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67