Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1024 ATGCAGAGCTCCACGTTTCGTTTGGCATTTTTGGTAGTGTTGATCTCTGTGCTTCTCTCTCTCAGAGATCCTAGCAAGGGTGAACCACAAAACCATGCTATTCATGGCATTTCTCCCCCAAAACTTGATCATCAGCCTTCTCTGGAATACGATTTTTACCGCAATTCTTGCCCAAAAGCTGAGTCCATCGTCAGATCGAGCATGGCTCAAATTTTCGCTGCCCACAGCGACACCCCTCCAGCTCTTTTGCGCCTGTTGTTCCATGATTGCTTTATTCAGGGATGTGATGCTTCCATACTTCTGGATGATAGCAATGAGAGCACGAACCGATCAGCTGAAAAGCTGGCCATTCCTAATCAGACCTTGAAGGGTTTTGACAAAGTCGAAAAGATCAAGGAAGAGCTTGAAAAAGCTTGTCCTGGGGTTGTCTCTTGCGCTGATATTCTTGTGCTTGCCACCAGAGATGGCATTGTCCTGGCTGGTGGCCCATTCTATCCAGTTTTTACTGGAAGGAGAGACAGTAATCAATCCTACTTTCAAGAAGCCATGGATGATATTCCAAAGCCGGACGGTAATATTACTCAAACACTTGGTCTATTCACTCTTAGAGGATTCAATGAAAGAGAAACAGTGAGTTTATTAGGAGGTCATAGCATTGGCAAAATCAGCTGTGAATTCATACAAGGACGCCTCTTCAACTTCTCGGGGACAGGGCAGCCAGACCCAAGTATAGCTTCTGATTTCCTTGATGAAATGAGACGGAATTGCCAAGACAGTGGCAACAGCAGCAATGGCACGGCTTCTCCTCCCATGGTATCAAGAGCTATGAGTGAGTTAACCTTGGGGATGACATACTATCAAGGATTGTCATCTTCAGTCTCATCTGGTTCTGCTTTTGACACCCATTACTACCAGAGCTTGCTGCAAGGGAGAGGACTTCTTTTTTCTGATCAGCAATTGATGGCTGAAGAGAAGACAGAAAGATTGGTCAGAGCTTATGCTTCTGATGATGGGTCTACCTTTCAAATAGACTTCGCTCGCTCTATGATGAAGATGTCGACCCTCAGTGTCCTGACTGGATCTCAAGGTCAGGTCCGGCTCAACTGCTCAAAGATGGTCAGCTCCTAA 1128 45.83 MQSSTFRLAFLVVLISVLLSLRDPSKGEPQNHAIHGISPPKLDHQPSLEYDFYRNSCPKAESIVRSSMAQIFAAHSDTPPALLRLLFHDCFIQGCDASILLDDSNESTNRSAEKLAIPNQTLKGFDKVEKIKEELEKACPGVVSCADILVLATRDGIVLAGGPFYPVFTGRRDSNQSYFQEAMDDIPKPDGNITQTLGLFTLRGFNERETVSLLGGHSIGKISCEFIQGRLFNFSGTGQPDPSIASDFLDEMRRNCQDSGNSSNGTASPPMVSRAMSELTLGMTYYQGLSSSVSSGSAFDTHYYQSLLQGRGLLFSDQQLMAEEKTERLVRAYASDDGSTFQIDFARSMMKMSTLSVLTGSQGQVRLNCSKMVSS* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16513245 16515107 - Vvi1g1024 Vvi1g1024 770224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1024 375 PANTHER PEROXIDASE 25-RELATED 52 370 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Plant peroxidase signature 57 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Plant peroxidase signature 81 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Plant peroxidase signature 123 136 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Plant peroxidase signature 142 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Plant peroxidase signature 161 176 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Plant peroxidase signature 208 220 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Plant peroxidase signature 290 305 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Plant peroxidase signature 306 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Plant peroxidase signature 347 360 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 ProSiteProfiles Plant heme peroxidase family profile. 47 373 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 Gene3D - 52 371 - -
Vvi1g1024 375 ProSitePatterns Peroxidases proximal heme-ligand signature. 209 219 IPR019793 -
Vvi1g1024 375 Gene3D Peroxidase, domain 2 187 353 - -
Vvi1g1024 375 Pfam Peroxidase 64 336 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 CDD secretory_peroxidase 48 371 IPR033905 GO:0004601|GO:0042744
Vvi1g1024 375 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Haem peroxidase superfamily signature 143 160 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Haem peroxidase superfamily signature 161 173 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Haem peroxidase superfamily signature 209 224 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PRINTS Haem peroxidase superfamily signature 292 307 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1024 375 PANTHER PEROXIDASE 52 370 - -
Vvi1g1024 375 SUPERFAMILY Heme-dependent peroxidases 48 372 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1024 K00430 E1.11.1.7; peroxidase [EC:1.11.1.7] - vvi:100265025 722.235
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1024 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009604 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 32