Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1026 ATGGAAACACTGAGAAGGGAAGCTGTTCTGTGCTTTGTGGCTTTTCTCTGCTTATGGAATTCCGCAAGTTCTTTGCTCTCTCCCAAAGGCGTCAACTTTGAAGTGCAAGCTTTGATGAGTATTAAAAATTCGCTGATAGATCCTCGCAGCGTGCTTGAAAATTGGGATAAAGATGCCGTTGATCCATGTAGCTGGAATATGATCACTTGTTCTGATGATAAACTAGTCATTAGCCTAGGAACCCCAAGTCAGAACTTATCCGGTACTCTTTCCCCAAGCATCGGAAACCTAACAAATCTCCAGACAGTACTCCTACAGGATAACAGCATATCAGGACCAATTCCCTCAGAGCTTGGAAAGCTATCAAAGCTTCACCTGCTTGATCTTTCTAATAATTTTTTCAATGGAGAGATCCCCACTTCCCTATCTCATCTCAAAAGCCTCCAGTACCTGAGGCTAAACAACAACAGTCTCTCCGGAGCAATTCCTTCATCCTTGGCTAATATGACTCACCTCGCGTTTCTGGACATGTCCTACAATAATTTGAGCGGTCCTGTACCAGGGTTTGCTGCCAGAACATTCAACATTGTTGGAAACCCTCTAATATGTCCAACCGGGACTGAGAAAGACTGCTTTGGGAGACCAACACCGCTGCCCGTCTCTATTAGCATGAACAATTCTCAAAGCTCTCAACCTTCTGCAAGACCTAAAAGTCACAAGGTTGCCTTAGCATTTGGGTCAAGCCTAGGATGCATCTGCCTACTGATTCTCGGATTCGGGTTTCTTCTCTGGTGGAGGCAGAGGCACAACCAGCAAATATTCTTTGATGTTAACGAACAATATCGTGAAGAAGTTTGCCTTGGAAACTTGAGGAGGTTTCCATTCAAAGAACTTCAAATTGCCACCAACAATTTCAGCAGCAAGAACATACTTGGAAAGGGTGGTTTCGGGAATGTCTACAAAGGATATCTCCAAGATGGTACTGTTGTAGCCGTGAAAAGGCTAAAAGATGGAAATGCCATTGGAGGGGTGATCCAATTTCAAACTGAAGTGGAGATGATAAGCCTTGCAGTGCATAGGAATCTCCTCAGACTTTATGGGTTTTGTATGACGACGACAGAGCGGCTCTTGGTTTACCCCTACATGTCAAACGGCAGCGTTGCTTATCGTCTTAAGGCCAAGCCAGCATTGGACTGGAGTACAAGGAAAAGAATTGCCTTGGGGGCCGCAAGGGGTTTATTGTACCTGCACGAGCAGTGTGACCCCAAGATAATTCACAGGGATGTGAAGGCTGCAAATATCTTGCTGGATGACTACTGTGAGGCCGTAGTAGGAGATTTTGGTCTGGCAAAGCTTTTGGATCACCGGGATTCCCATGTCACAACAGCTGTTAGGGGTACTGTGGGGCATATAGCTCCAGAGTATCTCTCAACAGGCCAGTCCTCGGAAAAAACAGATGTTTTTGGATTTGGAATCCTTCTACTTGAATTAATTACCGGCCAAAGAGCTCTAGAATTTGGGAAAGCAGCAAACCAGAAAGGAGCTATGCTGGACTGGGTAAAGAAAATTCACCAGGAAAAGAAGCTGGATATGCTAGTGGACAAGGATCTGAAGGCCAACTATGACAGAATAGAGCTGGAGGAAATGGTTCAAGTAGCTCTCTTGTGCACCCAATACCTTCCGAGTCACAGACCTAAAATGTCTGAAGTGGTTCGAATGCTTGAAGGAGATGGGCTCGCAGAGAAATGGGAAGCGACTCAAAGGGCGGAAGCAACCAGGTGCAAAGCCAATGAGTTCTCCTCTTCAGAAAGATACTCTGATCTTACTGATGACTCTTCATTGCTGGTGCAAGCAATGGAGCTCTCTGGACCCAGGTGA 1878 45.58 METLRREAVLCFVAFLCLWNSASSLLSPKGVNFEVQALMSIKNSLIDPRSVLENWDKDAVDPCSWNMITCSDDKLVISLGTPSQNLSGTLSPSIGNLTNLQTVLLQDNSISGPIPSELGKLSKLHLLDLSNNFFNGEIPTSLSHLKSLQYLRLNNNSLSGAIPSSLANMTHLAFLDMSYNNLSGPVPGFAARTFNIVGNPLICPTGTEKDCFGRPTPLPVSISMNNSQSSQPSARPKSHKVALAFGSSLGCICLLILGFGFLLWWRQRHNQQIFFDVNEQYREEVCLGNLRRFPFKELQIATNNFSSKNILGKGGFGNVYKGYLQDGTVVAVKRLKDGNAIGGVIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVAYRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLDMLVDKDLKANYDRIELEEMVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEATQRAEATRCKANEFSSSERYSDLTDDSSLLVQAMELSGPR* 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16552191 16556024 + Vvi1g1026 Vvi1g1026 770226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1026 625 ProSiteProfiles Protein kinase domain profile. 305 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1026 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 625 - -
Vvi1g1026 625 SMART serkin_6 305 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1026 625 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 3 625 - -
Vvi1g1026 625 SUPERFAMILY L domain-like 34 202 - -
Vvi1g1026 625 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Vvi1g1026 625 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Vvi1g1026 625 Gene3D Phosphorylase Kinase; domain 1 274 381 - -
Vvi1g1026 625 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Vvi1g1026 625 SUPERFAMILY Protein kinase-like (PK-like) 283 575 IPR011009 -
Vvi1g1026 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Vvi1g1026 625 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Vvi1g1026 625 Gene3D Transferase(Phosphotransferase) domain 1 382 594 - -
Vvi1g1026 625 Pfam Protein kinase domain 306 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1026 Vvi14g957 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76485 PF00069 Pkinase 3.00E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1026 - - vvi:100249555 1213.75