Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g1026 | ATGGAAACACTGAGAAGGGAAGCTGTTCTGTGCTTTGTGGCTTTTCTCTGCTTATGGAATTCCGCAAGTTCTTTGCTCTCTCCCAAAGGCGTCAACTTTGAAGTGCAAGCTTTGATGAGTATTAAAAATTCGCTGATAGATCCTCGCAGCGTGCTTGAAAATTGGGATAAAGATGCCGTTGATCCATGTAGCTGGAATATGATCACTTGTTCTGATGATAAACTAGTCATTAGCCTAGGAACCCCAAGTCAGAACTTATCCGGTACTCTTTCCCCAAGCATCGGAAACCTAACAAATCTCCAGACAGTACTCCTACAGGATAACAGCATATCAGGACCAATTCCCTCAGAGCTTGGAAAGCTATCAAAGCTTCACCTGCTTGATCTTTCTAATAATTTTTTCAATGGAGAGATCCCCACTTCCCTATCTCATCTCAAAAGCCTCCAGTACCTGAGGCTAAACAACAACAGTCTCTCCGGAGCAATTCCTTCATCCTTGGCTAATATGACTCACCTCGCGTTTCTGGACATGTCCTACAATAATTTGAGCGGTCCTGTACCAGGGTTTGCTGCCAGAACATTCAACATTGTTGGAAACCCTCTAATATGTCCAACCGGGACTGAGAAAGACTGCTTTGGGAGACCAACACCGCTGCCCGTCTCTATTAGCATGAACAATTCTCAAAGCTCTCAACCTTCTGCAAGACCTAAAAGTCACAAGGTTGCCTTAGCATTTGGGTCAAGCCTAGGATGCATCTGCCTACTGATTCTCGGATTCGGGTTTCTTCTCTGGTGGAGGCAGAGGCACAACCAGCAAATATTCTTTGATGTTAACGAACAATATCGTGAAGAAGTTTGCCTTGGAAACTTGAGGAGGTTTCCATTCAAAGAACTTCAAATTGCCACCAACAATTTCAGCAGCAAGAACATACTTGGAAAGGGTGGTTTCGGGAATGTCTACAAAGGATATCTCCAAGATGGTACTGTTGTAGCCGTGAAAAGGCTAAAAGATGGAAATGCCATTGGAGGGGTGATCCAATTTCAAACTGAAGTGGAGATGATAAGCCTTGCAGTGCATAGGAATCTCCTCAGACTTTATGGGTTTTGTATGACGACGACAGAGCGGCTCTTGGTTTACCCCTACATGTCAAACGGCAGCGTTGCTTATCGTCTTAAGGCCAAGCCAGCATTGGACTGGAGTACAAGGAAAAGAATTGCCTTGGGGGCCGCAAGGGGTTTATTGTACCTGCACGAGCAGTGTGACCCCAAGATAATTCACAGGGATGTGAAGGCTGCAAATATCTTGCTGGATGACTACTGTGAGGCCGTAGTAGGAGATTTTGGTCTGGCAAAGCTTTTGGATCACCGGGATTCCCATGTCACAACAGCTGTTAGGGGTACTGTGGGGCATATAGCTCCAGAGTATCTCTCAACAGGCCAGTCCTCGGAAAAAACAGATGTTTTTGGATTTGGAATCCTTCTACTTGAATTAATTACCGGCCAAAGAGCTCTAGAATTTGGGAAAGCAGCAAACCAGAAAGGAGCTATGCTGGACTGGGTAAAGAAAATTCACCAGGAAAAGAAGCTGGATATGCTAGTGGACAAGGATCTGAAGGCCAACTATGACAGAATAGAGCTGGAGGAAATGGTTCAAGTAGCTCTCTTGTGCACCCAATACCTTCCGAGTCACAGACCTAAAATGTCTGAAGTGGTTCGAATGCTTGAAGGAGATGGGCTCGCAGAGAAATGGGAAGCGACTCAAAGGGCGGAAGCAACCAGGTGCAAAGCCAATGAGTTCTCCTCTTCAGAAAGATACTCTGATCTTACTGATGACTCTTCATTGCTGGTGCAAGCAATGGAGCTCTCTGGACCCAGGTGA | 1878 | 45.58 | METLRREAVLCFVAFLCLWNSASSLLSPKGVNFEVQALMSIKNSLIDPRSVLENWDKDAVDPCSWNMITCSDDKLVISLGTPSQNLSGTLSPSIGNLTNLQTVLLQDNSISGPIPSELGKLSKLHLLDLSNNFFNGEIPTSLSHLKSLQYLRLNNNSLSGAIPSSLANMTHLAFLDMSYNNLSGPVPGFAARTFNIVGNPLICPTGTEKDCFGRPTPLPVSISMNNSQSSQPSARPKSHKVALAFGSSLGCICLLILGFGFLLWWRQRHNQQIFFDVNEQYREEVCLGNLRRFPFKELQIATNNFSSKNILGKGGFGNVYKGYLQDGTVVAVKRLKDGNAIGGVIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVAYRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLDMLVDKDLKANYDRIELEEMVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEATQRAEATRCKANEFSSSERYSDLTDDSSLLVQAMELSGPR* | 626 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16552191 | 16556024 | + | Vvi1g1026 | Vvi1g1026 | 770226 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g1026 | 625 | ProSiteProfiles | Protein kinase domain profile. | 305 | 584 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi1g1026 | 625 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 3 | 625 | - | - | |
Vvi1g1026 | 625 | SMART | serkin_6 | 305 | 560 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi1g1026 | 625 | PANTHER | PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 | 3 | 625 | - | - | |
Vvi1g1026 | 625 | SUPERFAMILY | L domain-like | 34 | 202 | - | - | |
Vvi1g1026 | 625 | ProSitePatterns | Protein kinases ATP-binding region signature. | 311 | 333 | IPR017441 | GO:0005524 | |
Vvi1g1026 | 625 | Pfam | Leucine rich repeat | 123 | 182 | IPR001611 | GO:0005515 | |
Vvi1g1026 | 625 | Gene3D | Phosphorylase Kinase; domain 1 | 274 | 381 | - | - | |
Vvi1g1026 | 625 | Pfam | Leucine rich repeat N-terminal domain | 34 | 71 | IPR013210 | - | |
Vvi1g1026 | 625 | SUPERFAMILY | Protein kinase-like (PK-like) | 283 | 575 | IPR011009 | - | |
Vvi1g1026 | 625 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 424 | 436 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi1g1026 | 625 | Gene3D | Ribonuclease Inhibitor | 31 | 213 | IPR032675 | - | |
Vvi1g1026 | 625 | Gene3D | Transferase(Phosphotransferase) domain 1 | 382 | 594 | - | - | |
Vvi1g1026 | 625 | Pfam | Protein kinase domain | 306 | 572 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76485 | PF00069 | Pkinase | 3.00E-44 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g1026 | - | - | vvi:100249555 | 1213.75 |