Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1029 ATGACTATGCTTCTACTGAGTCTGATCAGCCTCTTCCCATACATCTTTGTTGTTTCCTTGCTATACTCTTCATGTTTATTGTCTTCTGATGCAACATCAACTATGACCATGTCTTGTATAAGTTTGACTATGAGGTGTACTTGCATAGAAATGGGAGCGCATGACGTTTTGGCCTCAGAGGGAGCTGTTTTTAATTGGATGTGCAGTGAGAATGACAACATCTTGATCTCAAAAATTGAAAATCATTTTAGGGTTCAGATAATAGATTCTAGGCCAAGGGGCTCCCTCATTCAGTGTTATATAAAATGGAATCGTACCAACCAAACATATCATCTCTATCTCGGCTTAATTCAAGCTTCAACTAATGATGGAAAGTTTCTTCTTGCTGCATGGAACTGTAGACGTCCTACTTGCACAGACGATATCATCTCTCTTAATGATGATGATGTTTGGAAGGGGAGCACCACTTATATAGGAAAGTTGAGGTCAAATTTTCGGGGAACGAAGTTCACTGTGTATGATGCACATGCAACCTCTAAATGTAGGAGCAAGGATTAG 558 39.61 MTMLLLSLISLFPYIFVVSLLYSSCLLSSDATSTMTMSCISLTMRCTCIEMGAHDVLASEGAVFNWMCSENDNILISKIENHFRVQIIDSRPRGSLIQCYIKWNRTNQTYHLYLGLIQASTNDGKFLLAAWNCRRPTCTDDIISLNDDDVWKGSTTYIGKLRSNFRGTKFTVYDAHATSKCRSKD* 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16601693 16612318 + Vvi1g1029 Vvi1g1029 770229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1029 185 Pfam Tub family 91 179 IPR000007 -
Vvi1g1029 185 PANTHER TUBBY-RELATED 54 180 - -
Vvi1g1029 185 Gene3D Tubby Protein; Chain A 78 185 IPR025659 -
Vvi1g1029 185 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 54 180 - -
Vvi1g1029 185 SUPERFAMILY Tubby C-terminal domain-like 83 179 IPR025659 -
Vvi1g1029 185 PRINTS Tubby superfamily signature 141 157 IPR000007 -
Vvi1g1029 185 PRINTS Tubby superfamily signature 157 181 IPR000007 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1029 K19600 TUB, TULP; tubby and related proteins - vvi:100244335 150.214
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019241 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14455 PF01167 Tub 5.20E-25 CL0395 Vvi TF