Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g103 ATGGGTTGTCCAACTGCACTTAGAAAGGGGTGTTGGACACAAGAAGAAGACAGCTTACTCAGGAAATATGTTAAGGAGTTTGGAGAAGAGAACTGGAAGCACATCGCTGCAAAATCAGGGCTTCGCCGGTGTCGCAAGAGTTGCAGGTTAAGATGGTTGAATTATCTTCGACCTAATATCAAGCGCGGCAACTTTGGGGCTGATGAGGATGATCTGATCATGAGACTACATCGACTCTTGGGCAACAGATGGAGTATGATTGCAGGAAGGATTCCAGGGAGAACACCAAATGAAATAAAGAACTACTGGAAATCTTACTTGAGCAAGAAGATAGCATCAGAGACAAACAAAAATTCAGTACCAGTGAAGCATAGGACTCAGAGCTCAGCCATGGATGCTGAGAGAATGGGATCAGCTTCAGAGCGAAAACAAGGAAAAGAGGAAGAGGAAGATACTGTAGCATTCTGGAGGAGACTGCTGTCAGAGGCAGAATACAAGGAAAAGTTTGTTTGGCATGATTCTTGCATTCCAAGCATCCAAGTACAACTGTTTTGGTTTCTCAGTTACCCAAGTTTTTTATTTTTGTGGATGCTCTGGATGGCTTGTGACTTGTCATTAAATAATTGA 627 43.06 MGCPTALRKGCWTQEEDSLLRKYVKEFGEENWKHIAAKSGLRRCRKSCRLRWLNYLRPNIKRGNFGADEDDLIMRLHRLLGNRWSMIAGRIPGRTPNEIKNYWKSYLSKKIASETNKNSVPVKHRTQSSAMDAERMGSASERKQGKEEEEDTVAFWRRLLSEAEYKEKFVWHDSCIPSIQVQLFWFLSYPSFLFLWMLWMACDLSLNN* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1030307 1032374 + Vvi1g103 Vvi1g103 769303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g103 208 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Vvi1g103 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Vvi1g103 208 SMART sant 61 109 IPR001005 -
Vvi1g103 208 SMART sant 8 58 IPR001005 -
Vvi1g103 208 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 207 - -
Vvi1g103 208 CDD SANT 64 107 IPR001005 -
Vvi1g103 208 MobiDBLite consensus disorder prediction 117 134 - -
Vvi1g103 208 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vvi1g103 208 Gene3D - 64 138 - -
Vvi1g103 208 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vvi1g103 208 MobiDBLite consensus disorder prediction 117 147 - -
Vvi1g103 208 CDD SANT 12 56 IPR001005 -
Vvi1g103 208 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 3 207 - -
Vvi1g103 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 60 IPR017930 -
Vvi1g103 208 Gene3D - 4 62 - -
Vvi1g103 208 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Vvi1g103 208 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14456 PF00249 Myb_DNA-binding 1.20E-15 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g103 K09422 - vvi:100260989 359.762