Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1031 ATGGCTCAAGATACTTCTGGTGCCGAATCACCTCAGCCGAGGCCAGGTCTCTTAAAAGATCAAGTTCGATTGGTTAGGCGAAAGAACTCTGATCGCTATGAGATTGTCCCAATCCAAGATCGTCTGTCATTTGAGAAGGGTTTTTTCATAGTTATCCGTGCATGCCAATTGCTAGCCCAAAATAATGATGGAATAATATTGGTAGGTTTAGCAGGTCCCTCTGGGGCTGGGAAGACTGTTTTTACTGAAAAGATACTCAACTTTATGCCCAGCATTGCTGTCATATCAATGGACAACTACAATGATGCTAGCCGAATTGTTGATGGCAACTTTGATGATCCCCGTTTGACAGACTATGATACATTGCTCCAGAATGTCCATGATCTGAAGGCTGGAAAGCAGGTTCAGATTCCAATTTATGATTTCAAGTCTAGCTCCCGCACAGGATACAGGACACTTGAAGTCCCAAGCTCCCGTATTGTGATCATTGAGGGTATCCATGCTTTGAGTGAAAAGATGCGACCTTTATTGGACCTCCGGGTATCTGTAACAGGTGGAATTCACTTTGATCTTGTCAAACGGGTTTTGAGGGACATACAACGTGCTGGGCAAGAACCAGAAGAAATCATTCAACAAATATCTGAAACGGTATATCCAATGTACAAGGCTTTTATTGAGCCAGATCTCGGAACAGCACATATAAAAATCACCAATAAGTTCAACCCATTCACTGGATTTCAGAGTCCCACTTATATTTTGAAGTCTGCGAGGAATGTGACAGTGGATCAAATCAAGGCTGTCATCACTGAAGAACATGCAGAAACTATGGAGGAAGTCTATGATATTTATCTTCTACCCCCTGGTGAAGATCCTGAATCTTGCCAATCATATTTAAGGATGCGGAATAAAGATGGAAAATACAGTCTCATGTTTGAGGAATGGGTTACTGATAATCCATTTGTTATATCACCAAGAATAACTTTTGAAGTCAGTGTGCGGCTTCTTGGTGGGCTAATGGCCTTGGGGTACACAATAGCAACTATCCTGAAAAGAAACAGCCATGCATTTTCTGATGACAGGGTGTGTGTGAAAATTGATTGGTTGGAACAGCTAAACCGTCAATATATTCAGGTGCAAGGAAAAGACCGTTTGGTGGTAAAATGTGTTGGGGAGCAGCTCCAGTTGGAAGGTTCATATAGTCCTCGTACTTACATAGAACAAATTCAGCTCGAAAAGCTTGTAAATGAAGTTATGGCATTGCCAGATGATTTGAAGACAAAGCTTAGTATAGATGAGGATATGGTTTCCAGCCCCAAAGAGGCTCTTTCTCGATTCTCTGCAGACAGTGTTGCTATGAGAAATAAGCACTTCAAGAGTGGTATGTCGCACTCATATTCAACCCATCGAGACAAGAATCTGTCTAATCATACTGGATTTTCCGTCAGCAACCGAAAGTTTGATGACAGACCCACAGAATTACCAGCAATGCTAGCAAACAAGGGAGCCATTACTCAGCTGTCAGAACAAATTTCATCACTAAATGATAGGATGGATGAATTTACAAGTCAGATTGAAGAGCTGAATTCCAAGTTAACCATGAAGAAAGTTTCTGCAAGCCAACAAAACTTGGCTTTTCAGGCTGAAGCAAACAATGGCTCTGCTCCTACTTTCTTCATCCCTGGCATAGGCAATGGTTCCTTGACTGGAACCATGATGCACAAATCCTCATCTTCCTCCCAGTTGGCTAAGGAGCTTCCTTTAATGGAAGAGATACTAGGAATTGCACGGAGTCAACGGCAAGTGATGCATCAGTTGGACAATATTAGCAGTCTTGTGCGGGAGGACATAGGAGGAGGGAGATCAGAGGGAGGAAGAAGAGAGAGGAAAAGCATAATGCTTGACATTGAACCCACTAGAGTTCCTCTGATATTGGCACTGGCAGTTGGTGGCTTGGGTATATTCTTGTTTAAAGCATTTCTACCCAGAAACTGA 1992 42.42 MAQDTSGAESPQPRPGLLKDQVRLVRRKNSDRYEIVPIQDRLSFEKGFFIVIRACQLLAQNNDGIILVGLAGPSGAGKTVFTEKILNFMPSIAVISMDNYNDASRIVDGNFDDPRLTDYDTLLQNVHDLKAGKQVQIPIYDFKSSSRTGYRTLEVPSSRIVIIEGIHALSEKMRPLLDLRVSVTGGIHFDLVKRVLRDIQRAGQEPEEIIQQISETVYPMYKAFIEPDLGTAHIKITNKFNPFTGFQSPTYILKSARNVTVDQIKAVITEEHAETMEEVYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHAFSDDRVCVKIDWLEQLNRQYIQVQGKDRLVVKCVGEQLQLEGSYSPRTYIEQIQLEKLVNEVMALPDDLKTKLSIDEDMVSSPKEALSRFSADSVAMRNKHFKSGMSHSYSTHRDKNLSNHTGFSVSNRKFDDRPTELPAMLANKGAITQLSEQISSLNDRMDEFTSQIEELNSKLTMKKVSASQQNLAFQAEANNGSAPTFFIPGIGNGSLTGTMMHKSSSSSQLAKELPLMEEILGIARSQRQVMHQLDNISSLVREDIGGGRSEGGRRERKSIMLDIEPTRVPLILALAVGGLGIFLFKAFLPRN* 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16623442 16639232 - Vvi1g1031 Vvi1g1031 770231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1031 663 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Vvi1g1031 663 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Vvi1g1031 663 Coils Coil 503 530 - -
Vvi1g1031 663 Gene3D - 66 260 IPR027417 -
Vvi1g1031 663 PANTHER URIDINE KINASE 6 648 - -
Vvi1g1031 663 CDD UMPK_like 67 239 - -
Vvi1g1031 663 PRINTS Uridine kinase signature 65 82 - -
Vvi1g1031 663 PRINTS Uridine kinase signature 132 147 - -
Vvi1g1031 663 PRINTS Uridine kinase signature 188 198 - -
Vvi1g1031 663 PRINTS Uridine kinase signature 224 237 - -
Vvi1g1031 663 PANTHER INORGANIC PYROPHOSPHATASE TTM2 6 648 - -
Vvi1g1031 663 SUPERFAMILY CYTH-like phosphatases 260 407 IPR033469 -
Vvi1g1031 663 Pfam CYTH domain 270 403 IPR023577 -
Vvi1g1031 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 238 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1031 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - vvi:100266718 1277.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1031 Vvi17g403 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1031 . . . . . . Bma14g01683 . . . . . . . . . . Bhi07g00113 . . Lac13g1620 Hepe01g0410 . . . . . . . . . . . . . . . Chy10g00122 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01026 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001604 2 5 3 2 2 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 2 3 2 2 2 2 5 4 2 71