Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1032 ATGATAAAAATCGTTACCGAAAACAGTTGCGACACGGCCAATTCTATTCTTTGTTTTTATATTTCTAACAAGAAAAAGTATCATTTTAACATTTTAGAATTGAATTATGTTGACTGTCTCCGTTTTAAAATAAAAGCAAAAAATAAAAATAAAAATAAAAGAAGAAAAGTAAAGTGGGCTTTCACCTGTGAGGTAACGTTTAGAGCAAGAAAGACAGCACCTCTCGCCGCTTTCATAACCTCTGTTTTAGATTTTCTCTTTTCTCTTCGTCTGTTCAAATTTTTGTGTTTGGATACGTGGGTTTTGGGTGGGTCGTTCGGCGTTTGGATTTCAGAGCCTGAAACTCTCGCGTTTGTTGCGGAACATAGATCAAGGAGAAACATGGAAGATGTCCTAACAGAGATTCCCCCACCTTCAAGGTTTTTTAAAGAAGATCTCAACAACTTTACTCCTCCATCACCTCCTCTTCCATCTCCATTCCTCTTATTTTCTAGTCTGGACAAGCCCCTTCGTTCCTCCCTTCTCATCATTGCCATATCTTCTCCTTCTCTCTCTGTGTTCCACCATGTTGCCACAAAAACCCTAATTGGGACTCTCATTCTCCCTGAGATTCCCTTATCTGGAAACTCTATTGAACCATCTGTCAGAGACAAATCCTGCAATATATATGCCCTTAATGATGGTTTGGACTATTTCCCATCAGGAAGCATGGTAGATGGCTTGGCTGCTGCTCTGCTCAGTCAATGCCAGATGAGGAACATCAAAGGAACTCTATGCGTTTCATGGCCAGAGTTTGGTGGTTCTGGGGTGTCACTGGTTAAATCTATAATAAAGGAGGTCTTGCCTAGCTTGGAATTTAGTATGGCACCTTCTCTTCATTCAAGGCCTTTCCTTCTGCTATTCGTGCTTTTAAGTCTGTCCATTCTTTGCATGAGGAGCTTGGATGCAAGTGAGCCTTATTTGACATTAGATTACTATGCATCCTCATGTCCATCTGTGCTCGAGATCGTGAGGAAAGAAATGGAATGTGCAGTGCTCTCTGATCCTCGTAATGCAGCCTTCATATTGCGGTTGCATTTCCATGACTGCTTCGTTCAGGGATGTGATGGATCGGTTTTGCTGGACGACACAATTACACTGCAAGGAGAGAAGAAGGCTTCAATTAACATCAATTCCCTCGATGGTTTCAGACTGATTGATAGGATAAAAAACAAGCTTGAATCAGAGTGCCCAGGGATTGTATCCTGTGCAGATATTCTAACTGTTGCAGCAAGAGATGCTGTTATTCTGGTTGGTGGACCCTACTGGGATGTTCCTCTGGGAAGAAAAGATTCGACAACTGCAAACTATGATCTTGCTACAGCCAATCTTCCTGCTGCAAATGAAGACCTTTTAAGCATCATTTCTAAATTTCTTTATCAAGGCCTCTCAGTCACAGATGTGGTAGCTCTCTCAGGGGCTCACACTATTGGCATGGCACGGTGTGAGAATTTCCGAGCAAGGATCTATGGAGACTTCAAAGGAACTTCAGGGAATAATCCAGTTTCCAACACTTACCTCAGTAACTTGAAATCCATATGCCCAGCCACTGGTGGAGGAGAAGATAACACAGCTGGAATGGACTATGTCACTCCCAACTACTTCGACAATTCCTTTTATCATCTTCTTCTGAAAGGGGAGGGACTGCTGAACTCAGACCAGGAGCTGTACTCTAGCCTGTTTGGTATCCAAACAAAGGGGCTTGTGAAGAAGTACGCAGAGGATTCACTTGCTTTCTTCCAGCAGTTCTCGGATTCCATGGTGAAACTGGGAAACATCACAAATGCTGACAGCTTCAGTACTGGGGAGGTTAGGAAGAACTGCAGATTTGTGAATACATGA 1881 42.58 MIKIVTENSCDTANSILCFYISNKKKYHFNILELNYVDCLRFKIKAKNKNKNKRRKVKWAFTCEVTFRARKTAPLAAFITSVLDFLFSLRLFKFLCLDTWVLGGSFGVWISEPETLAFVAEHRSRRNMEDVLTEIPPPSRFFKEDLNNFTPPSPPLPSPFLLFSSLDKPLRSSLLIIAISSPSLSVFHHVATKTLIGTLILPEIPLSGNSIEPSVRDKSCNIYALNDGLDYFPSGSMVDGLAAALLSQCQMRNIKGTLCVSWPEFGGSGVSLVKSIIKEVLPSLEFSMAPSLHSRPFLLLFVLLSLSILCMRSLDASEPYLTLDYYASSCPSVLEIVRKEMECAVLSDPRNAAFILRLHFHDCFVQGCDGSVLLDDTITLQGEKKASININSLDGFRLIDRIKNKLESECPGIVSCADILTVAARDAVILVGGPYWDVPLGRKDSTTANYDLATANLPAANEDLLSIISKFLYQGLSVTDVVALSGAHTIGMARCENFRARIYGDFKGTSGNNPVSNTYLSNLKSICPATGGGEDNTAGMDYVTPNYFDNSFYHLLLKGEGLLNSDQELYSSLFGIQTKGLVKKYAEDSLAFFQQFSDSMVKLGNITNADSFSTGEVRKNCRFVNT* 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16683139 16690231 - Vvi1g1032 Vvi1g1032 770232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1032 626 Pfam Peroxidase 337 588 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 Gene3D Peroxidase, domain 2 458 603 - -
Vvi1g1032 626 PRINTS Haem peroxidase superfamily signature 352 366 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PRINTS Haem peroxidase superfamily signature 414 431 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PRINTS Haem peroxidase superfamily signature 432 444 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PRINTS Haem peroxidase superfamily signature 480 495 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PRINTS Haem peroxidase superfamily signature 541 556 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 ProSiteProfiles Plant heme peroxidase family profile. 320 625 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 SUPERFAMILY Heme-dependent peroxidases 321 625 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PANTHER PEROXIDASE 11 311 624 - -
Vvi1g1032 626 ProSitePatterns Peroxidases active site signature. 352 363 IPR019794 GO:0004601
Vvi1g1032 626 ProSitePatterns Peroxidases proximal heme-ligand signature. 480 490 IPR019793 -
Vvi1g1032 626 CDD secretory_peroxidase 321 624 IPR033905 GO:0004601|GO:0042744
Vvi1g1032 626 Gene3D - 324 625 - -
Vvi1g1032 626 PRINTS Plant peroxidase signature 330 349 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PRINTS Plant peroxidase signature 354 374 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PRINTS Plant peroxidase signature 394 407 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PRINTS Plant peroxidase signature 413 423 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PRINTS Plant peroxidase signature 432 447 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PRINTS Plant peroxidase signature 479 491 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PRINTS Plant peroxidase signature 539 554 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PRINTS Plant peroxidase signature 555 572 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PRINTS Plant peroxidase signature 598 611 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1032 626 PANTHER PEROXIDASE 72-RELATED 311 624 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1032 K00430 - vvi:100261517 673.7