Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1033 ATGGGTTTGCTTGAATCCGCCGCTTCCATTAACTGGGAGCATGAATCCTTCCCAGAATATGGAGATTTCGTTGCTCTTCCCGTCTTTGCTTTTTTCTTCTTCTCTGTTCGCTTCTTTCTCGATAGATTTGTCTTCCAGAAATTGGGAAGAATACTGATTTTTGGAAAGGGTGGTCAGCAGCTAGATGTTGGGGTAGATGAGAAGAGAAAGAAATTACGAAAGTTCAAGGAATCAGCATGGAAGTGTGTTTATTTTCTTTCAGCAGAGCTTCTAGCTCTATCTGTAACTTATGATGAGCCTTGGTTTACTAACACAAAATATTTTTGGGTAGGGCCTGGTAATCAAGTCTGGCCTGACCAACAGATTAAGTTGAAATTGAAGGGTTTGTATATGTATTGTGGTGGATTCTACACATACTCCATATTTGCTTTGATTTTTTGGGAAACAAGGCGGTCTGATTTTGGAGTGTCAATGGGTCATCATGTGGCAACTTTTATTCTCATTGTGCTGTCTTACATATTCAGATTCGCCCGTGTTGGTTCTGTTGTTTTAGCTCTTCATGATGCTAGTGATGTCTTTCTGGAGGTAGGGAAGATGTCCAAATACAAAGGTGCTGAAACCACTGCAAGCATCTCTTTCATTCTTTTTGTTTTGTCTTGGATCGTACTTCGCCTAATTTACTATCCATTCTGGATCCTTCGGAGCACAAGCTATGAAGTTATCCTGACCTTGGACAAGGAAAAGCATGCAGTGGAAGGACCAATTTATTATTATTTGTTCAATACTCTTCTATTCTGCTTGCTTGTTCTTCACATTTATTGGTGGGTGTTGATGTATCGGATGCTTGTTAAACAAGTCCAAGCAAGAGGCCAACTTAGTGATGATGTTAGATCTGACTCTGAAGATGAAGATGAACATGAAGATTGA 927 39.91 MGLLESAASINWEHESFPEYGDFVALPVFAFFFFSVRFFLDRFVFQKLGRILIFGKGGQQLDVGVDEKRKKLRKFKESAWKCVYFLSAELLALSVTYDEPWFTNTKYFWVGPGNQVWPDQQIKLKLKGLYMYCGGFYTYSIFALIFWETRRSDFGVSMGHHVATFILIVLSYIFRFARVGSVVLALHDASDVFLEVGKMSKYKGAETTASISFILFVLSWIVLRLIYYPFWILRSTSYEVILTLDKEKHAVEGPIYYYLFNTLLFCLLVLHIYWWVLMYRMLVKQVQARGQLSDDVRSDSEDEDEHED* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16692429 16716306 - Vvi1g1033 Vvi1g1033 770233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1033 308 PANTHER LAG1 LONGEVITY ASSURANCE HOMOLOG 3 8 308 - -
Vvi1g1033 308 ProSiteProfiles TLC domain profile. 73 287 IPR006634 GO:0016021
Vvi1g1033 308 SMART lag1_27 73 287 IPR006634 GO:0016021
Vvi1g1033 308 PANTHER LONGEVITY ASSURANCE FACTOR 1 LAG1 8 308 IPR016439 GO:0046513|GO:0050291
Vvi1g1033 308 Pfam TLC domain 74 280 IPR006634 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1033 - - - vvi:100251278 558.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1033 . . . . . . . . . . . . . . . . Cpe01g01901 . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01495 . . . . . . Cmo04g02291 Cmo15g00872 Cma04g02191 Cma15g00840 Car04g02117 Car15g00791 . . Bhi12g01045 . . . . . . Cla01g00724 Cam01g0751 Cec01g0750 Cco01g0776 Clacu01g0743 Cmu01g0712 Cre09g1794 Lsi09g00784 Csa05g01365 Chy09g00416 Cme09g01204
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003002 2 2 2 2 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 11 1 53