Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1034 ATGGTTCACAATGGTATTGAATATGGTGATATGCAGCTGATTGCAGAGGCCTATGATGTGCTTAAATCAGTTGGTAAGCTCTCCAATGAGGAATTGCGTAATGTTTTCTCGGAGTGGAACAAGGGGGAGCTTTTGAGCTTCTTGATTGAGATTACTGCAGATATCTTCAGTATTAAGGATGATAAGGGAGACGGATTTTTGGTAGACAAGGTTTTGGACAAAACTGGCATGAAAGGGACTGGTAAATGGACAGTTCAGCAAGCTGCTGACCTATCAGTTGCAGCCCCAACTATAGCATCCTCTTTGGATGCAAGGTTCCTCAGTGGGCTGAAGGAAGAGCGTGTTGAAGCTGCCAAAGTTTTCAAATCAAGTGGTTTTGAAAACTCTGCCTGGCGAAGGGTTGTTTGCCTTGCCATCAACTCAGGCATTAGCACTCCGGGTATGTCTTCTAGTCTTGCTTACTTTGATTCCTACAGGAGGGACAGGCTGCCTGCTAATTTGGTCCAAGCTCAAAGAGATTATTTTGGAGCTCATACCTATGAGAGGATTGATACAACAGGATCTTTCCATACCGAATGGTTCAAGATTGCTCAGCAGTCAAAGATTTGA 609 44.01 MVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELRNVFSEWNKGELLSFLIEITADIFSIKDDKGDGFLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSSGFENSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRDRLPANLVQAQRDYFGAHTYERIDTTGSFHTEWFKIAQQSKI* 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16739673 16740975 - Vvi1g1034 Vvi1g1034 770234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1034 202 SMART 6PGD_2 1 194 IPR006114 GO:0004616|GO:0006098
Vvi1g1034 202 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 1 123 IPR006114 GO:0004616|GO:0006098
Vvi1g1034 202 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 129 193 IPR006114 GO:0004616|GO:0006098
Vvi1g1034 202 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING 128 201 - -
Vvi1g1034 202 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING 1 126 - -
Vvi1g1034 202 Gene3D - 1 127 IPR013328 GO:0016491
Vvi1g1034 202 Gene3D - 128 161 IPR013328 GO:0016491
Vvi1g1034 202 Gene3D - 163 195 - -
Vvi1g1034 202 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 1 126 IPR006183 GO:0004616
Vvi1g1034 202 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 128 201 IPR006183 GO:0004616
Vvi1g1034 202 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 1 195 IPR008927 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1034 K00033 PGD, gnd, gntZ; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] - vvi:100246134 251.906
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0828 Cone9ag0828 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001018 5 3 4 3 3 2 0 2 2 2 2 2 4 2 2 5 2 4 5 2 2 2 4 3 2 2 3 5 3 1 83