Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1042 ATGGATTATCTCCAACCCTCCAAGCGCCTAAAAGTCTCCACCCCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCAAAAGCCTACTCCTCCCTGTTTCTTCTCTTTCCCATTCCCAATCCCAAGACCCCCACCAAAGCCCTCCTTCCTCTCCCTCCTCCGCCCTCACCGCCCACCAAAAATCCCGGATCGAATTCAACAAATTCCTTGCAAAATCCAAGAGAAATCTCACCATATGCTCCCAGAAAGTCTCCAAATCTAAAGCTGAAGGGGTTGGTTTTGTGGAATTGGAGGACCTCTTGTTGGAAGAGACGTGGTTGGATGCGCTTCCTGGGGAGTTTCAGAAGCCCTATGCCAAGACGCTCTGCAGATTTTTGGAACGGGAGGTGTGCGGCAGTGGCGTGCCCATTTATCCTCCACAGCACTTGATCTTCAATGCTCTTAACTCCACGCCATTCGACAGGGTCAAGGCTGTGATTATTGGACAGGATCCATATCATGGCCCTGGTCAAGCAATGGGCCTTTCATTTTCTGTGCCAGAGGGGGTGAAAGTTCCTTCAAGTCTGGTAAATATATTTAAGGAACTACAGCAAGATTTAGGCTGTTCAATTCCATCTCATGGGAATTTGGAGAAATGGGCTGTACAGGGTGTTCTGTTGCTCAACGCTGTTCTTACTGTTAGGAGTCATCAAGCTAATTCTCATGCAAAGAAAGGATGGGAGCAATTTACTGATTCTGTCATTAGAACAATTTCACAAAAGCAAAGAGGAGTTGTTTTCCTTCTATGGGGAAACTCTGCTCAAGAGAAATCCAGGTTGATTGATGACACGAAGCACCACATACTCAAAGCTGCACATCCTTCTGGTTTATCCGCAAACAGAGGTTTCTTTGGATGCAGGCATTTTTCTCGCACAAACAAGATTCTGGAGCAAAAGGGAGTACCCCCCATTGATTGGCAACTTTGA 966 47.62 MDYLQPSKRLKVSTPTSSSSSSSSSPKSLLLPVSSLSHSQSQDPHQSPPSSPSSALTAHQKSRIEFNKFLAKSKRNLTICSQKVSKSKAEGVGFVELEDLLLEETWLDALPGEFQKPYAKTLCRFLEREVCGSGVPIYPPQHLIFNALNSTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKVPSSLVNIFKELQQDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRSHQANSHAKKGWEQFTDSVIRTISQKQRGVVFLLWGNSAQEKSRLIDDTKHHILKAAHPSGLSANRGFFGCRHFSRTNKILEQKGVPPIDWQL* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16963232 16970228 + Vvi1g1042 Vvi1g1042 770242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1042 321 TIGRFAM ung: uracil-DNA glycosylase 104 313 IPR002043 GO:0004844|GO:0006281|GO:0006284
Vvi1g1042 321 Pfam Uracil DNA glycosylase superfamily 154 308 IPR005122 -
Vvi1g1042 321 SMART UDG_2 149 309 IPR005122 -
Vvi1g1042 321 Hamap Uracil-DNA glycosylase [ung]. 103 320 IPR002043 GO:0004844|GO:0006281|GO:0006284
Vvi1g1042 321 MobiDBLite consensus disorder prediction 1 57 - -
Vvi1g1042 321 Gene3D - 80 321 IPR036895 -
Vvi1g1042 321 PANTHER URACIL-DNA GLYCOSYLASE 25 321 IPR002043 GO:0004844|GO:0006281|GO:0006284
Vvi1g1042 321 CDD UDG-F1-like 118 319 IPR002043 GO:0004844|GO:0006281|GO:0006284
Vvi1g1042 321 MobiDBLite consensus disorder prediction 9 57 - -
Vvi1g1042 321 SUPERFAMILY Uracil-DNA glycosylase-like 101 321 IPR036895 -
Vvi1g1042 321 ProSitePatterns Uracil-DNA glycosylase signature. 157 166 IPR018085 GO:0006281|GO:0016799
Vvi1g1042 321 SMART UDG_2_a 149 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1042 K03648 UNG, UDG; uracil-DNA glycosylase [EC:3.2.2.27] - vvi:100253025 539.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1042 . . . . . . . . . . . . . . Sed04g3062 . . Bhi07g00120 Tan04g1675 Cmetu10g0133 Lac13g1644 Hepe01g0395 . . . . . . . . . . . . . . . Chy10g00117 Cme10g01102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01019 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011117 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 31