Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1044 ATGGCAGTGCCGCTGGCGAGGGTCCGGCTCTGCGATATTGTGTCTTATGATGGTGCGCCGGCGGGGCCGTATGTTCGAGCGGTGGAGGCGCTGTCGGGGTCTCTGATGCGGCACAACGCCGCGGTGATCGAGCTCGGGAGCGAGGACGCCGCCTTGATGAGGTGCGGTTTGGAGTCGGCGAGGTTGTATTTCAAGGCTAGGGCTTTGAGTGTTGGCACCGGAGGAGGCAATTGGGGGAAGGGGAGTCGCGGTGTTTACATGTACAGGGCGGGAAGGGCTTTGGAAGATTCGGACTTGTCTCCTCCATGCATGGCTGAAGTTTTTAGATGCATGGGAAAAGCCGCTCGTGCTGCTCTGTGTGCTATTGCAAGATATCTTCGTTTGCGAAGCGATGTTTTCAATCCTCTGCTTGATGATACCCCATTGCCTATTAATGAGGCATCCTCATCAGTGCTTGTTGCAACCTACTCTCATGGGTCCTTGCAAAATGGCAAAGGAGCCATTGGGGGAGGGAAGCCAGCTATGAATGGTGAAGTTGAGAAGGGTTTGCTGACATTGATTTCTTCGGATAATCCTGGTCTTCAGGTTTGTGACCCCAATGGTCGTTGGTACCTGGCAGATGGTGGGTCAGCTCCTGGGGATCTTTTGCTGCTTACTGGGAAGGCGCTTAGCCATGCTACTGCTGGCCTTCGTCCTGCTGCCACCTATAGAGCTGCTTCTGATTACACTTCAGGCACTGCTAGTGGAAGGACATCACTAGCATTTAGGCTCATGCCGCAGGGCAATGCTATATTAGATTGTTCTCCAATTGCTGCTGCTGGTCATGTAATTCCACAGAGCTATGTACCAATCTCTGTAAGCCAATTTATGGATGACCTTTCTGCTGAGGAAGATGGACTGTGCAACCCTTCCGATAGCACTTATGTAGCTCGAAATAATTTTAATAGGGAACCATCATTAAGAAGTGTGCTGTCGGATCCCTTATCGGGTGCATTTCTTGAAGATGCAATGGTTGTTTCATGCGGGCACACTTTTGGTGGTCTCATGCTGAGAAAGGTCATTGAAATGTCAAGATGTACTCTTTGCAATGCAGAAATTGATACCAGTTCTTTGATCCCTAATCATGCTCTTAGAGCTGCAGCTGCTGCTGTAAAACATGAGGATGACCGGAGGCTTTTTCATAATGCTGCTCTCCGGAAGCGTCGGAAAGAAGTTGGTGATCAAACAGATTCAATAAGAAGATTAAACAGGGAAAATGGAGATATTAGTGCTGATGATGGGATGCACAGAGGTGTGCAGTATCCATTTTCAGTAAATGAGAAAGTGATAATTAAGGGAAATCGAAGGACACCGGATAAATTTGTTGGGAAGGAGGCTGTCATTACATCCCAGTGTTTGAATGGCTGGTACCTGCTTAAGATTATTGGAAGTGGGGAAAGTGTTCGCCTACAGTACCGTTCGTTAAGGAAGATCTTGAACTCCCATGCAGCTGAAGACAGATGTCCATCACAGCCAATTCAGAGCAGCAGCTGA 1533 48.86 MAVPLARVRLCDIVSYDGAPAGPYVRAVEALSGSLMRHNAAVIELGSEDAALMRCGLESARLYFKARALSVGTGGGNWGKGSRGVYMYRAGRALEDSDLSPPCMAEVFRCMGKAARAALCAIARYLRLRSDVFNPLLDDTPLPINEASSSVLVATYSHGSLQNGKGAIGGGKPAMNGEVEKGLLTLISSDNPGLQVCDPNGRWYLADGGSAPGDLLLLTGKALSHATAGLRPAATYRAASDYTSGTASGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEDGLCNPSDSTYVARNNFNREPSLRSVLSDPLSGAFLEDAMVVSCGHTFGGLMLRKVIEMSRCTLCNAEIDTSSLIPNHALRAAAAAVKHEDDRRLFHNAALRKRRKEVGDQTDSIRRLNRENGDISADDGMHRGVQYPFSVNEKVIIKGNRRTPDKFVGKEAVITSQCLNGWYLLKIIGSGESVRLQYRSLRKILNSHAAEDRCPSQPIQSSS* 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17019946 17056744 + Vvi1g1044 Vvi1g1044 770244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1044 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 400 IPR013083 -
Vvi1g1044 510 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 509 - -
Vvi1g1044 510 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 6 509 - -
Vvi1g1044 510 SUPERFAMILY RING/U-box 319 386 - -
Vvi1g1044 510 Gene3D - 92 295 IPR027443 -
Vvi1g1044 510 SUPERFAMILY Clavaminate synthase-like 103 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1044 - - - vvi:100247878 993.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1044 . . . . . . . . . . . . . . . . . Bhi07g00139 . . Lac13g1653 . . . . . . . . . . . . . . . . Chy10g00104 Cme10g01121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01011 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002937 2 6 1 0 1 1 2 1 1 2 2 1 2 2 2 1 1 3 2 1 2 2 2 2 3 2 2 2 2 1 54