Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1047 ATGAAGACAACGCTGGCGGTGATCTTTTCCTGTGTTTTGGTCTCAAGCCTGGCACTTGGTTCACAATCACAAAGTGGAGAAAGGAGTTCCCAATGGCAGATTCTCACCAAAGCAAACTTCTCTTCTCAGATCCGACTCCACCCTCACCTTCTCCTTCTCATCACTGTTCCCTGGTCTGGTGAGGCTCAATCCCTTATGAAGGAATTAGCTAATGTAGTTACTGAGAAGCAAGAGAAACTTGGTGCCATAAAACTGATGCTTATATACAGAAATAGTGAAAAGGTGCTGGCAGATGCCCTTGGTGCTATGGAGGAAATAACAATTCTAAACTACCACCATTCTGTGCCTTATAAGTATCAAGGAAGACTTCGACCACAAAACATATTATCTTCTGCTTATTCTCTTATGTCATTTTTTCCTGAAGAACTTCCCCTCAAACCCCTAAAAACTCACGAGGAATTGAAACTGTTTCTTGAATCAACTGACAAAGCTTTACTTCTCCTGGAATTTTGTGGATGGACCCCCAGATTGTTGGCAAAGGGGAAGAACAATGGAACTGAAGATGCCTTTGGTGAACAAGGGGTTCCATTTGGATTAGATTTCAAGGGAGAGACAAATATAACACTTGAACCAAGAGGGAACGAAAACCAGAAGGGAATGCAAAATGAAAAGCTGAACTGTGGCATTGAAAATGGGTTTAATGACATTCCTTGGCTTGGAGATTTCAGCAGAGTAAATGACAGTGATCCTTACCTGGAAACTGAGAATATAACACCTGGGGTTAAGTTGTCCTGTACCATTGAAGAGTTTAAGCAGTTTGATTTTTTTCTCTCGAAGTTCATGACAGTTGCAGGAGAGTTCTTCCTGCCCTTAGAACGGCAAAGATTTGGTTTAGTTTCTAATAGATCTCTGCTTTCATCTCTGGATATTGGAGATTCTGGTTCATGGTTTGCAATGGTTTACTTTGCTGGATGTCCCTCTTGTTCAAAGATTCTGAAGGAAGGGGATGACCTCCGTAGTGTTTTACAGACGCAAAATTCACTTGTTGCAGAGATGGAAGATGATGGGCATGATACTGAGCCTACTTTACCTTCGAGTGAGCCATCGGTTGTTCTTTTTGTGGATAGATCATCCGATTCATCAAGAATTAGACGAAAGAGTAAGGCAGCTCTGAATGCTTTTAGAGAATTAGCACTGGACTATCAGATATCATTTCAAATGGGCGGACAAAGTGACAATAAGCCTGATAAACCCTCTCTCCAAGTTTATCATGCATCAGGGAGTAAATTTGGACATCCTAAGTTATCGGTATCTCCAACAAGTCAAGAGATGAAAGCAAAGGATAAGATATCTGTCATGGTTATAAATAAGGGTAAACGTTTGGATAGCATAACTTCAGATTTACAAGGTAGTTCCTTGAATGAGATCTTGGGATACTTGCTTCAGCATAAGAAAAAGGCAAAATTAAGCTCACTCGCGAAGGAGGTAGGATTCCAACTTCTATCTGATGACTTTGATGTCCAAATAGCTGATACATCAACATCACAGGCTGAACCTCAGTCTAGTCAAGTTTCACCAGAACTGTCTGTGGAAGGCCTTGTTGAAAATAGTGCTGATTTGGACAAGGATCAGTCACTATATACTGCAGGCATATCTGCTGTGAACATGGCTGAAGAATCTAAACCTACTGTTGTTGAACCTTCTTCTGAGCATGGCAAAGAGAGGACAACTCATGTTGTTACAAGCACACAGTCACCATCTATAGAACCTGCCCAATTTCTTGCAAGTCATGAACTTACAATAACTGAAGATTTGAAGGTGGAAGAGAAAGGTTTTTCACAGTTAGACCAATTAGGGAAACAACAGAAATACTCTCAGGGTTTTAAAGGTTCCTTTTTCTTTTCTGATGGTGGCTACAGGTTACTTAGAGCTCTAACTTCTGGTTCAAAGATTCCATCAGCAGTAATAATTGATCCTATTTTACAGCAGCATTATGTTTTTCCAGAAAATACAGTGTTTAGTTATTCTTCACTGGCTACTTTTCTTGATGGTTTTTGTAATGGAAGCCTTCTTCCATATCAACACTCTGATTCTGTTGTTCTAAGCCCTAGGGAGGCCCCACGTCCACCATTTGTTAATCTGGATTTTCATGAGGTGGATTTTATCCCTCGAGTTACAACCCATACGTTCTCGGAGCTGGTTCTTGGTTTTAACAAATCTAGCAGTCAATATGGTGGCCATGCTTGGAAGAAAGATGTGTTGGTCCTTTTCACCAACAATTGGTGTGGATTTTGCCTGAGAATGGAACTGGTTGTTCGTGAAATATACCAGGCAATAAAGGGCTACATGAACATGTTGAAGAGTGGATCTGAGAATGGACAATCGATATTTAGCAGCAATAACTCAAAGGATGCTACTTTGAAGCTCCCACTGATTTACCTGATGGATTGCACATTGAATGAATGTAGTTTGATTCTAAAATCAAATGATCAGAGAGAAATATATCCGGCTCTGGTTTTATTTCCTGCTGAAACAAAGAATGCTCTATCGTATGAAGGGGATATGGCTGTAACTGATGTTATCAAGTTTATAGCTGGTCATGGAAGTAATTCTCATCATCTCATGGGAGATAATGGCATTTTATGGACAAAAGCAGAAAAAAAAATCAGGAATCAGAATTTATTTAAGGAAGCATCCCCAACTATAATTCACGAGGAAGCTCCTGCCGCAAAGGAAAAACAGCATGAAGTCCTATTGAAGAACAGAAATCCAAAAAGAGCATATAAATACAACCGGATAAGATCTTACACATCAAGCAGATCACATGAAGCAGCCTATCATGTGGTTGTTGGTTCAATCCTTGTTGCTACTGACAAGCTTCTTGATGCCCATCCATTTGATAAATCCACAATTCTCATTGTGAAGGCAGATCAGGCTACAGGATTTCATGGTTTGATTATCAACAAACATATCAATTGGGAATCTCTCAATGAATTGGCAGAAGGTGTAGATCACCTGAAAGAGGCTCCTTTATCCTTTGGAGGCCCAGTCGTAAAACGTGGAAAGCCTCTTGTTGCTTTAACTCGAAGGGTTTTTAAAGATCAGCACCCAGAAGTCTTACCTGGTGTTTACTTTCTTGATCAGTCTGCCACAGTTTCGGAAATTGAAGGGCTGAAGTCAGGAAACGAATCTGTTAGCGAGTATTGGTTTTTCGTGGGTTTTTCAAATTGGGGTTGGGACCAGCTATTTGATGAGATTGCTGAAGGAGCTTGGAACATAACTGATGATAATATGGGACAGTTAGATTGGCCATTGAGGTGA 3321 40.41 MKTTLAVIFSCVLVSSLALGSQSQSGERSSQWQILTKANFSSQIRLHPHLLLLITVPWSGEAQSLMKELANVVTEKQEKLGAIKLMLIYRNSEKVLADALGAMEEITILNYHHSVPYKYQGRLRPQNILSSAYSLMSFFPEELPLKPLKTHEELKLFLESTDKALLLLEFCGWTPRLLAKGKNNGTEDAFGEQGVPFGLDFKGETNITLEPRGNENQKGMQNEKLNCGIENGFNDIPWLGDFSRVNDSDPYLETENITPGVKLSCTIEEFKQFDFFLSKFMTVAGEFFLPLERQRFGLVSNRSLLSSLDIGDSGSWFAMVYFAGCPSCSKILKEGDDLRSVLQTQNSLVAEMEDDGHDTEPTLPSSEPSVVLFVDRSSDSSRIRRKSKAALNAFRELALDYQISFQMGGQSDNKPDKPSLQVYHASGSKFGHPKLSVSPTSQEMKAKDKISVMVINKGKRLDSITSDLQGSSLNEILGYLLQHKKKAKLSSLAKEVGFQLLSDDFDVQIADTSTSQAEPQSSQVSPELSVEGLVENSADLDKDQSLYTAGISAVNMAEESKPTVVEPSSEHGKERTTHVVTSTQSPSIEPAQFLASHELTITEDLKVEEKGFSQLDQLGKQQKYSQGFKGSFFFSDGGYRLLRALTSGSKIPSAVIIDPILQQHYVFPENTVFSYSSLATFLDGFCNGSLLPYQHSDSVVLSPREAPRPPFVNLDFHEVDFIPRVTTHTFSELVLGFNKSSSQYGGHAWKKDVLVLFTNNWCGFCLRMELVVREIYQAIKGYMNMLKSGSENGQSIFSSNNSKDATLKLPLIYLMDCTLNECSLILKSNDQREIYPALVLFPAETKNALSYEGDMAVTDVIKFIAGHGSNSHHLMGDNGILWTKAEKKIRNQNLFKEASPTIIHEEAPAAKEKQHEVLLKNRNPKRAYKYNRIRSYTSSRSHEAAYHVVVGSILVATDKLLDAHPFDKSTILIVKADQATGFHGLIINKHINWESLNELAEGVDHLKEAPLSFGGPVVKRGKPLVALTRRVFKDQHPEVLPGVYFLDQSATVSEIEGLKSGNESVSEYWFFVGFSNWGWDQLFDEIAEGAWNITDDNMGQLDWPLR* 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17179383 17239791 - Vvi1g1047 Vvi1g1047 770247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1047 1106 PANTHER TRANSPORTER, PUTATIVE-RELATED 36 1105 - -
Vvi1g1047 1106 Gene3D - 943 1101 - -
Vvi1g1047 1106 Gene3D Glutaredoxin 27 136 - -
Vvi1g1047 1106 SUPERFAMILY VC0467-like 949 1099 - -
Vvi1g1047 1106 MobiDBLite consensus disorder prediction 558 583 - -
Vvi1g1047 1106 SUPERFAMILY Thioredoxin-like 30 132 IPR036249 -
Vvi1g1047 1106 PANTHER TRANSPORTER, PUTATIVE (DUF179)-RELATED 36 1105 - -
Vvi1g1047 1106 SUPERFAMILY Thioredoxin-like 750 873 IPR036249 -
Vvi1g1047 1106 Pfam Uncharacterized ACR, COG1678 961 1095 IPR003774 -
Vvi1g1047 1106 Gene3D Glutaredoxin 716 866 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1047 - - - vvi:100854034 2149.4
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005205 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 7 1 39