Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g105 ATGGATGCTTTTAACACTCCCATAACCTTGCCCATGTCTTACTCTTTCACTAGTAGTGGTGGTAGTACCAGTAGTGGTACTGCTGCCAATACAAATATTAATCCCTGGATGGACAGTAGGATATGGAGTAAGCTCCCACAGAGGCTGATCGATCGGGTGATTGCCTTCCTCCCACCTCCAGACTTTTTTCGAGCCAGAGCAGTGTGTAAGAGATGGTATGGACTCTTATTTTCCAGCAGCTTTCTTGAATTGTATCTGCAAATATCCCCACGCCGCCATTGTGGTGGTGGCAGTGATAGAGCCAATTGTGAAGGATACCTCTTTGATCCTTACTCCAATTCATGGTATCGTCTTTCCTTCTCTCTGATCCCATCTGGGTTCTCTCCAGCTTCTTCCTCTGGTGGCTTAATCTGTTGGGTCTCTGATGAGGCCGGTCCCAAGGGTCTATTCCTCTGCAACCCACTTGTTGGGTCTCTATCCCAATTGCCTCCCACCCTGAGACCCCGTCTCTTCCCGTCCATCGGCTTAACAGTCACTCCCTCATCCATAGACGTAGCTGTTGCTGGAGATGACTTGATTTCTCCATATGCGGTCAAGAATCTGACCACAGAAAGCTTTCACATTGATGGGGGTGGGTTCTATTCAATATGGGGCACCACTTCTTCTCTACCAAGGCTCTGCAGCCTCGAATCCGGGCGAATGGTTCACGTCCAAGGGAGATTCTACTGCATGAACTACAGCCCATTCAGTGTTTTGGCATATGACATAGCAGCCAACAATTGGTGGAAGATTCAAGCTCCAATGAGAAGATTTCTCCGGTCCCCAAGCTTGGTGGAGAGCAGAGGGAGACTCATTCTAGTTGCAACAGTGGAGAAGAGCAAGCTTAACGTGCCAAAAAGCTTGAGGATTTGGGGTTTGCAAGCTTGTGGAACAACATGGGTGGAGATTGAGAGAATGCCACAGCAACTCTACCTTCAATTTGCAGAGGTTGAAGGCAGCCAAGGGTTTGACTGTGTAGGTCATGGAGAGTTCATTGCCATTATGATTCGAGGTTCAGACAAGGCATTGCTGTTTAACATCTATGGAAAGACCTGGCAATGGATTCCTCCATGTCCTTTCCTTAGTGGGAGCGGCGGCAGCAGCAGTAGCAGTGGAGAAGGTTGTGAGTTGCACGGCTTTGCATATGAGCCTAGGCTTGCCACGCCAGTGACCACCCTCCTTGATCAGCTCACACTTCCCTTTCAGCCTTTTAATGGATAG 1260 48.81 MDAFNTPITLPMSYSFTSSGGSTSSGTAANTNINPWMDSRIWSKLPQRLIDRVIAFLPPPDFFRARAVCKRWYGLLFSSSFLELYLQISPRRHCGGGSDRANCEGYLFDPYSNSWYRLSFSLIPSGFSPASSSGGLICWVSDEAGPKGLFLCNPLVGSLSQLPPTLRPRLFPSIGLTVTPSSIDVAVAGDDLISPYAVKNLTTESFHIDGGGFYSIWGTTSSLPRLCSLESGRMVHVQGRFYCMNYSPFSVLAYDIAANNWWKIQAPMRRFLRSPSLVESRGRLILVATVEKSKLNVPKSLRIWGLQACGTTWVEIERMPQQLYLQFAEVEGSQGFDCVGHGEFIAIMIRGSDKALLFNIYGKTWQWIPPCPFLSGSGGSSSSSGEGCELHGFAYEPRLATPVTTLLDQLTLPFQPFNG* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1060700 1062011 + Vvi1g105 Vvi1g105 769305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g105 419 PANTHER PROTEIN UNUSUAL FLORAL ORGANS 42 400 - -
Vvi1g105 419 Gene3D - 42 81 - -
Vvi1g105 419 Gene3D - 92 380 IPR015915 GO:0005515
Vvi1g105 419 ProSiteProfiles F-box domain profile. 39 88 IPR001810 GO:0005515
Vvi1g105 419 Pfam F-box domain 42 76 IPR001810 GO:0005515
Vvi1g105 419 SMART fbox_2 45 85 IPR001810 GO:0005515
Vvi1g105 419 PANTHER F-BOX/KELCH-REPEAT PROTEIN 42 400 - -
Vvi1g105 419 SUPERFAMILY Galactose oxidase, central domain 105 383 IPR011043 -
Vvi1g105 419 SUPERFAMILY F-box domain 32 118 IPR036047 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g105 - - vvi:100262784 804.668