Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1050 ATGGCACGTGTGATGGGCAAAGAAGAGCTAAGAATAGATATCAGCTCGCTAGCACAAGATGGACATGAAATTGAGACTGGGACTTCACCTGAACAGATGTCACCTGTAGATCTAATTTCTGGAGATAGAGACCTCTACCTCGCTGTATGCATACCTCTTTATCGTGCCGCCATGAAAGGTGACTGGAAAACTGCTAAAGGTATTTTTGAAATGTTTCCAGCAGCAGTGCGCTTCACCATCACACCAGGAGGGGACACAACCCTTCATATTGCTGCTGCAGCAAAGCATGTCTACTTTGTTGAGGAGATGGTGAAAATTATGGAACCAGAAGACTTAGAACTTAAGAACCAATATTCGAATACTGCTTTTTGGTTTGCTGCTGCAGCAGGAATAGTGGGAATTGCAAAGGCTATGGTGAAAAAGAATGAAATCCTTCCAATGATCCGAGCTTATGATGAAATGACACCACTCCATGTGGCTGCTCTATTAGGACATAGTGAGATGGTGTGGTATCTCTACAACAAGACTGATCATGAACAATTAACTGTTAGCGATTGGGTTAAGCTGCTTAATGCATGCATCAGTACTGATCTGTATGATGTAGCCTTGGACGTATCGAGCCATCACCCAACATTGGCTGTAGAAAGAGATGGGAATGGTGAAACTGCATTGCATCTCCTGGCTCGGAAGCCTTCTGCATTCTCGGGGGGAGATCAGCTTCATATATGGAACACTGTCATTAATTCAATATCATGTAAAAGAGTGGAAGACAAGAAAATTTTGAGGCAAAACAAATCTCTTAAACTAGTCAAACACCTTTGGCAGCAGGTTATAGTACAACCGCACTCCGAGATTTTAGATCTGATCAGATCTCCTTCTCCACTGCTCCTTGTTGCAGCAGAATTAGGAAACACTGTGTTCTTAACAGAGCTTATTGCCATATATCCTGATCTCATATGGGAAGTAGACGATCACAATAGGTCTATATTTCATATTGCAGTTTTACATCGCCAGGAGAATATCTTCAATCTTATATATGAGATAGGTTCAATGAAGGATTTGATTGTGCCAAATAAAGATGAGAATGATAACAACATCTTGCATTTGGCTGGAAGATTGGCACCCCCACGTCAACGCAATATTGTCGTAGGTGCAGCTCTTCAAATGCAACGAGAGCTATTATGGTTTAGGGAGGTGGAAAAGATGGTGCTACCTTCATTCAGAGAAAGGAAAAACAGAGATGGTGAAACACCCTGGGATTTGTTCACTAAGGAGCACAAAGATTTAATGAAGGAGGGGGAGAAGTGGATGAGAGGAACTGCTGCTCAATCTATGCTTGTTGCAACCCTCATAGCCACTGTTGTGTTTGCTGCAGCCCTCACTGTACCAGGCGGTAGCAATCAAGATACTGACGACGATTTTCTCGAGTTATTACCTTCCAGTCATGGAGTCACATGGGCCCCTATTCTTGTTGCTGTATTTGCTTTTTTGCTGGTCACACTTTATTTTTCAATGCAATGCCGCCTTTGGGCACATATAATTCGCGCCACATATTGCTCTAGGCTTATCTTTAGACCCAGGAAGCATATGCTTTACTAG 1599 42.71 MARVMGKEELRIDISSLAQDGHEIETGTSPEQMSPVDLISGDRDLYLAVCIPLYRAAMKGDWKTAKGIFEMFPAAVRFTITPGGDTTLHIAAAAKHVYFVEEMVKIMEPEDLELKNQYSNTAFWFAAAAGIVGIAKAMVKKNEILPMIRAYDEMTPLHVAALLGHSEMVWYLYNKTDHEQLTVSDWVKLLNACISTDLYDVALDVSSHHPTLAVERDGNGETALHLLARKPSAFSGGDQLHIWNTVINSISCKRVEDKKILRQNKSLKLVKHLWQQVIVQPHSEILDLIRSPSPLLLVAAELGNTVFLTELIAIYPDLIWEVDDHNRSIFHIAVLHRQENIFNLIYEIGSMKDLIVPNKDENDNNILHLAGRLAPPRQRNIVVGAALQMQRELLWFREVEKMVLPSFRERKNRDGETPWDLFTKEHKDLMKEGEKWMRGTAAQSMLVATLIATVVFAAALTVPGGSNQDTDDDFLELLPSSHGVTWAPILVAVFAFLLVTLYFSMQCRLWAHIIRATYCSRLIFRPRKHMLY* 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17305087 17308607 - Vvi1g1050 Vvi1g1050 770250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1050 532 SMART ANK_2a 325 354 IPR002110 GO:0005515
Vvi1g1050 532 SMART ANK_2a 83 114 IPR002110 GO:0005515
Vvi1g1050 532 SMART ANK_2a 219 257 IPR002110 GO:0005515
Vvi1g1050 532 SMART ANK_2a 152 183 IPR002110 GO:0005515
Vvi1g1050 532 SMART ANK_2a 118 147 IPR002110 GO:0005515
Vvi1g1050 532 Pfam Ankyrin repeats (3 copies) 88 177 IPR002110 GO:0005515
Vvi1g1050 532 Pfam Domain of unknown function 435 471 IPR026961 -
Vvi1g1050 532 Gene3D - 50 432 IPR036770 -
Vvi1g1050 532 SUPERFAMILY Ankyrin repeat 52 228 IPR036770 -
Vvi1g1050 532 PANTHER ANKYRIN REPEAT PROTEIN 488 532 - -
Vvi1g1050 532 PANTHER ANKYRIN REPEAT PROTEIN 78 471 - -
Vvi1g1050 532 PANTHER CASKIN 78 471 - -
Vvi1g1050 532 PANTHER CASKIN 488 532 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1050 - - - vvi:100266696 925.235
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1050 . . . . . . . . . Cmo18g00261 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000053 7 13 4 5 0 9 1 8 10 14 9 9 8 14 25 9 10 1 8 10 21 9 4 11 15 19 13 25 15 12 318