Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1051 ATGCCAGAGCTCTGTGATCTGCAAATCCATGTGAATGCCCAACAAACATTCTTTGTGAATGAGAAGATTATATCAAAGTATTCAGGGAGGTTGAAGAAGGTCATCAAGCAAGAAAAGAGAAGAACCCAGATCAAGAATTCGGGCATCGATATCGATGACTTTCCAGGTGGAGCAGATGGGTTTGAGCTGGTCTCAAGATTCTGCTACAACCATGGCAAGATAACTGTAACCGTGTCAAATGTGTCTCTCCTCCATTGCTGTGCAGTCTTTCTTGGAATGACTGAGAAGGTTTCACCTTGCAATCTCTTGCAACAGACAGAGACCTTTCTTGAAGGAATGTTTTACTGGTCATGGAATGATATACTGGTTTCTCTCAAGAGCTGTGAATCATTCTTCTCATATGCAGACTCATCAGGCCTTTTGGAAAAGCTCATAGGTGCACTTCTGGCAAAGTTTGCGCAGAATTCAGACATAATCCTCATTGCTCCATCTTCTTCTTCTTCATCTTCTCCTGAGACTACATCAGGGTTTCAGTTCTCTTCCTCGACGAAGAACACTCCTCAATCCATCAGGCGCCGTTCATCTAGCAAGGCATGGTGGTTTGATGATTTGAGCATTTTACCTCCAAAGATTATAGAGAAGGTCATCAAAAGCTTAGGGGCTTATAGCACTGAAAACAACAGCTTAGTCCTCACGAAATTCCTCCTCCATTACCTTCAGAAAACTGCTGTCCATAGAAAAGGTTCATTGAATTCAAGGTCTGAGTACGGTAGCCTTGCAGACACAGTTGCATATGGGGTGATTTTATTGGGGAAGACAGCATTTTCTTGGAGGGGTCTGTTCTGGATATTGAGGGTTGTTTCCGGATTGGGTCTGAGCAGAGACTGTAGAATTGGGCTGGAGAGATTGATTGGGGGGATGCTTGATCAAGCAACGTTGGATGATTTGTTGGTGTGCGGGCATGATGGGGGTGTTTATGATGTGAATCTGGTGTTGAGATTGATTAGAGTTTTTGTTAGTGATGATGGTGTGTCCGCACAGAAGATGAAGAAAGTTGGAAGATTGATTGATAAGTACTTGGGAGAGGTGTCTCCTGATCAGAATCTGAAGATCTCAAAGTTTCTCGGGGTTGCAGAAAGCTTACCAGATTCTGCAAGAGATTGTTTTGATGGAGTCTACAGAGCTATTGACATCTATCTTCAGTCTCATCCTACTCTTTCATTTGAGGAGCGATCAAGGTTATGCAGATGCCTAAACTATGAGAAGCTAACCCTGGAAGCCTGCAAAGACCTCGCGAAGAGCCCGAGAATTCCTCCAAAGATTGCAAGCCACGCCCAAATGGTCTTGTACAACAGCTTTGATGCAGAAAGCGTCTCCGAAGAGAATGAAGACATGAGGTTGAACCTGCAAAGAATGCAATGGAGGGTGGTAGAGTTAGAGAGAGCCTGCAGGAAGATGAAGGGTGAGATGTCAAGAATGGCAAGAAACAAGATTGCTACTTCACCTGGTAACAATAGAGCATTGCCTAGACTATGTTGA 1539 43.92 MPELCDLQIHVNAQQTFFVNEKIISKYSGRLKKVIKQEKRRTQIKNSGIDIDDFPGGADGFELVSRFCYNHGKITVTVSNVSLLHCCAVFLGMTEKVSPCNLLQQTETFLEGMFYWSWNDILVSLKSCESFFSYADSSGLLEKLIGALLAKFAQNSDIILIAPSSSSSSSPETTSGFQFSSSTKNTPQSIRRRSSSKAWWFDDLSILPPKIIEKVIKSLGAYSTENNSLVLTKFLLHYLQKTAVHRKGSLNSRSEYGSLADTVAYGVILLGKTAFSWRGLFWILRVVSGLGLSRDCRIGLERLIGGMLDQATLDDLLVCGHDGGVYDVNLVLRLIRVFVSDDGVSAQKMKKVGRLIDKYLGEVSPDQNLKISKFLGVAESLPDSARDCFDGVYRAIDIYLQSHPTLSFEERSRLCRCLNYEKLTLEACKDLAKSPRIPPKIASHAQMVLYNSFDAESVSEENEDMRLNLQRMQWRVVELERACRKMKGEMSRMARNKIATSPGNNRALPRLC* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17376949 17379343 - Vvi1g1051 Vvi1g1051 770251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1051 512 Coils Coil 455 496 - -
Vvi1g1051 512 Gene3D Potassium Channel Kv1.1; Chain A 1 112 IPR011333 -
Vvi1g1051 512 ProSiteProfiles NPH3 domain profile. 198 452 IPR027356 -
Vvi1g1051 512 ProSiteProfiles BTB domain profile. 5 70 IPR000210 GO:0005515
Vvi1g1051 512 PANTHER OSJNBA0018M05.10 PROTEIN 3 512 - -
Vvi1g1051 512 MobiDBLite consensus disorder prediction 164 190 - -
Vvi1g1051 512 PANTHER OS12G0117600 PROTEIN 3 512 IPR043454 -
Vvi1g1051 512 Pfam NPH3 family 199 428 IPR027356 -
Vvi1g1051 512 SUPERFAMILY POZ domain 3 100 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1051 - - - vvi:100259859 999.964
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01329 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013748 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 2 1 25