Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1052 ATGGCAAACTATTCAGGAACAGGAGCCCCTTCAAATGGCTCTGTCTATGTTTGTAACTTGCCTCATGGAACTGATGAAACTATGTTGGCTGAATATTTTGGCACCATTGGGTTGATAAAGAAAGACAAAAGAACAGGTCGACCTAAGATATGGTTGTACCGGGACAAAGTCACTAATGAACCAAAGGGTGATGCAACTGTAACATATGAGGATCCACATGCTGCATTAGCTGCTGTTGAATGGTTCAACAACAAAGATTTCCATGGAAGCATCATTGGAGTATTTATAGCGGAGTCGAAGAACAAAGATGATCACTCATATAACTCAGGGAATCAAGTGAATGATGTTGGAGATCCTGGTGCAGCCAGTGACTTAAGGGGTTTAGAAGAAGATCCTCTTGATATGAATGGAAGTGCTGGAAGAGGTAGAGGTCGGGGTGATGCTGCAGGAAAGGCATGGCAACAAGATGGAGACTGGTTGTGTCCGAATACAAGTTGTTCGAACGTGAACTTTGCATTTCGTGGTGTGTGCAATCGTTGTGGAAGTGCTCGACCTTCTGGTGTGTCTGGCAGTGGTGCAGGGGCAGGTGGTCGGGGGAGGGGCCGTGGTGGTCCTGACTCTGCAGGCCATGGCCGTTCAGTTGGTGCTCCAACAGGTCTTTTTGGTCCAAATGATTGGCCCTGTCCAATGTGTGGCAACATTAACTGGGCAAAGCGGACAAAGTGCAATATATGCAACACCAATAAGCCTGGCCATAATGAAGGTGGTGTGAGAGGAGGACGTGGTGGAGGTTACAAAGAACTTGATGAAGAAGAACTAGAGGAGACCAAAAGACGCCGGCGGGAGGCTGAAGAAGATGACGGTGAGTTGTATGATGAATTTGGAAATCTCAAAAAGAAGTTCCGTGCCAAAACGCAGCAAGCCGAAGCTGGACAGGTGCTTCCAGGTGCTGGGCGTGCAGGATGGGAAGTAGAGGAATTAGGTATGGCCGACAGAGATGGTAGAGAAAGAAGCAAAGACAGGGGAAGGGAGCGCGATGACAGGGAGAAGAATAGAGAACGAGATGATAGGGATAGGCGTCGGAGCCGAAGCAGGGAGAGGGATAGGGGAAAAGATCGAGACCGAGACCGAGATTATGATCACGATCGAGACAGAGACTATGGACGGGACCGGGACAGGGACAGGGACCGGGACCGGGACCGGGATAGAGACAGGGACCGGGATCGGAGCAGATACCGTTATTGA 1245 49.48 MANYSGTGAPSNGSVYVCNLPHGTDETMLAEYFGTIGLIKKDKRTGRPKIWLYRDKVTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIGVFIAESKNKDDHSYNSGNQVNDVGDPGAASDLRGLEEDPLDMNGSAGRGRGRGDAAGKAWQQDGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGVSGSGAGAGGRGRGRGGPDSAGHGRSVGAPTGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGELYDEFGNLKKKFRAKTQQAEAGQVLPGAGRAGWEVEELGMADRDGRERSKDRGRERDDREKNRERDDRDRRRSRSRERDRGKDRDRDRDYDHDRDRDYGRDRDRDRDRDRDRDRDRDRDRSRYRY* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17391224 17403345 - Vvi1g1052 Vvi1g1052 770252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1052 414 ProSiteProfiles Zinc finger RanBP2 type profile. 222 251 IPR001876 -
Vvi1g1052 414 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Vvi1g1052 414 SMART rrm1_1 14 95 IPR000504 GO:0003723
Vvi1g1052 414 SUPERFAMILY Ran binding protein zinc finger-like 215 252 IPR036443 -
Vvi1g1052 414 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 399 - -
Vvi1g1052 414 MobiDBLite consensus disorder prediction 263 290 - -
Vvi1g1052 414 CDD RRM_SARFH 15 97 - -
Vvi1g1052 414 MobiDBLite consensus disorder prediction 325 414 - -
Vvi1g1052 414 ProSitePatterns Zinc finger RanBP2-type signature. 159 180 IPR001876 -
Vvi1g1052 414 Coils Coil 266 293 - -
Vvi1g1052 414 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 399 - -
Vvi1g1052 414 MobiDBLite consensus disorder prediction 103 151 - -
Vvi1g1052 414 Pfam Zn-finger in Ran binding protein and others 225 251 IPR001876 -
Vvi1g1052 414 Pfam Zn-finger in Ran binding protein and others 156 186 IPR001876 -
Vvi1g1052 414 MobiDBLite consensus disorder prediction 250 290 - -
Vvi1g1052 414 MobiDBLite consensus disorder prediction 307 414 - -
Vvi1g1052 414 ProSitePatterns Zinc finger RanBP2-type signature. 226 245 IPR001876 -
Vvi1g1052 414 ProSiteProfiles Zinc finger RanBP2 type profile. 155 186 IPR001876 -
Vvi1g1052 414 SUPERFAMILY Ran binding protein zinc finger-like 150 187 IPR036443 -
Vvi1g1052 414 Gene3D - 12 95 IPR012677 -
Vvi1g1052 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Vvi1g1052 414 Gene3D - 153 188 - -
Vvi1g1052 414 Gene3D - 221 252 - -
Vvi1g1052 414 MobiDBLite consensus disorder prediction 182 219 - -
Vvi1g1052 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 90 IPR000504 GO:0003723
Vvi1g1052 414 SMART zf_4 157 183 IPR001876 -
Vvi1g1052 414 SMART zf_4 224 248 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1052 - - - vvi:100249627 595.119
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1052 . . . . . . Bma14g01743 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007014 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 1 1 36