Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1053 ATGGTTTTGCAGTCTACTTCTGCGAGCTTCCATTTCTCGCAGATTTTCAATGCTTGCTCCTGTGAAACCACTCCGTGGAATTTGAATTTCCCACCCATTGTTTTCTCCAAGAAAAGGAAGAGATTTTGCCGAAGGAAAAGGGTTTTTCTGGCTTGTGCGATTCCCTCTGACCGCCGACGCGGGAATTTCAATGTCCAATTGGCCAGTTCCACCAGCCGTGGAGCGAAAATCTTTGTGGTAAATCGATTCTCCGAGGAATTCAATGATGGGGAAGGGTCCCAAGAATCCTCAGTTCAAATGGGTTCACAATTCACCAACTTCCAAGAAGACCCAATTGTGGATAAGCTCAGGACTCAACTGGGTGTGATCCACCCCATCCCTTCGCCTCCCATTAATCGCAACATTGTTGGATTATTTGGGTTCTTTTTCTTGATTGGAGTAGTTTTCGATAAGGTATGGACATCGGGGAAGAAGAAGAAATCGAACATTGAGCAGGGGCGGTCCGGGATTTGGCCACAGGTGCCCACCAGTTTTTCCTTGCTTTTGGAAAAGGATTTGCAGAGGAAGGAGTCAGTAGAATGGGTGAACATGGTTTTGGGGAAGTTGTGGAAGGTGTACCGAGGTGGGATTGAGAATTGGCTCATTGGGTTGCTTCAGCCCGTCATTGACAATCTGAAGAAACCCGATTACGTGCAAAGAGTTGAAATTAAGCAGTTCTCCTTAGGGGATGAGCCGTTGTCAGTTAGGAATGTCGAGCGCAGAACTTCTCGTCGGGCCAATGATTTGCAGTATCAAATAGGCCTCCGTTATACAGGTGGGGCTCGAATGCTGTTAATGCTGTCACTTAAATTCAGCATCATCCCCATTGTTGTGCCAGTTGGTGTTCGTGATTTTGACATTGATGGGGAACTTTGGGTTAAATTGCGGTTGATTCCAACAGAGCCTTGGGTTGGAGCTGTTTCATGGGCTTTTGTTTCGCTTCCAAAAATAAAAGTTGAATTGTCACCATTTCGCTTGTTCAATCTAATGGCAATTCCTGTTCTTTCAATGTTTTTGAAAAAACTTCTCACTGAGGATTTGCCTCGACTTTTTGTACGTCCTAAGAAGACCGTTTTAGATTTCCAAAAAGGAAAAGCAGTTGGTCCTGTTGAAAATGCTTTAACGGGAGAAATGCAAGAAGGAAACAGGGACTTTGTTGGAGAACTATCGGTGACACTTGTAGATGCGCGGAAGCTCTCTTATGTTTTCTATGGTAAAACGGATCCTTACGTCACTCTAAGCATAGGAGATCAGAAAATACGTAGTAAAAAGAACAGTCAGACCACTGTCATTGGGCCTCCTGGTGAGCCAATTTGGAATCAGGATTTTCATATGCTTGTTGCAAATCCTAGAAAACAGAAATTACTAATCCAAGTGAAGGATTCTCTTGGATTTGCAGACCTGACAATTGGCACGGGAGAGGTTGATCTGGGATCTCTTAAAGATACTGTACCAACAGACAGGATAGTGGTCTTGCAAGGAGGCTGGGGTCTATTTAGGAGAGGTTCTTCTGGGGAAATATTACTTCGACTGACATATAAGGCATATGTTGAGGATGAAGAAGATGACAAGACAGAGGCAGAATCCATGGATACAGATGTTTCGGATGACGAGATGTCCGATTCTGAGGAAGTAGATGCTACCTTTGAGCAGAGTCAAAGGGGAACCTTGAATGGAACAGATAAAGAATCATTTATGGATCTTCTAGCAGCTTTGATTGTGAGTGAGGAATTTCAAGGGATTGTGGCATCTGAAACGGGAAGTATGCAACCTTCTGATGATGTTCCAAGTTTGGACCCAACAATATTAAGATCGATTGGCGTTACTTCTGAACTTAAACCTTCTAATCCAAATAGTGATTCTGAAATTTCTGGAGGAACAACATTATTATGGCTTTCTGTGATCACAAGTACTGCTGTGCTAATTGCCCTCTCCATGGGGGGTTCAAGTTTATTCAATCCCTAA 2004 43.61 MVLQSTSASFHFSQIFNACSCETTPWNLNFPPIVFSKKRKRFCRRKRVFLACAIPSDRRRGNFNVQLASSTSRGAKIFVVNRFSEEFNDGEGSQESSVQMGSQFTNFQEDPIVDKLRTQLGVIHPIPSPPINRNIVGLFGFFFLIGVVFDKVWTSGKKKKSNIEQGRSGIWPQVPTSFSLLLEKDLQRKESVEWVNMVLGKLWKVYRGGIENWLIGLLQPVIDNLKKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRRANDLQYQIGLRYTGGARMLLMLSLKFSIIPIVVPVGVRDFDIDGELWVKLRLIPTEPWVGAVSWAFVSLPKIKVELSPFRLFNLMAIPVLSMFLKKLLTEDLPRLFVRPKKTVLDFQKGKAVGPVENALTGEMQEGNRDFVGELSVTLVDARKLSYVFYGKTDPYVTLSIGDQKIRSKKNSQTTVIGPPGEPIWNQDFHMLVANPRKQKLLIQVKDSLGFADLTIGTGEVDLGSLKDTVPTDRIVVLQGGWGLFRRGSSGEILLRLTYKAYVEDEEDDKTEAESMDTDVSDDEMSDSEEVDATFEQSQRGTLNGTDKESFMDLLAALIVSEEFQGIVASETGSMQPSDDVPSLDPTILRSIGVTSELKPSNPNSDSEISGGTTLLWLSVITSTAVLIALSMGGSSLFNP* 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17455711 17470659 - Vvi1g1053 Vvi1g1053 770253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1053 667 MobiDBLite consensus disorder prediction 533 573 - -
Vvi1g1053 667 Pfam C2 domain 400 496 IPR000008 -
Vvi1g1053 667 Gene3D C2 domain 390 529 IPR035892 -
Vvi1g1053 667 SMART C2_3c 401 502 IPR000008 -
Vvi1g1053 667 MobiDBLite consensus disorder prediction 534 558 - -
Vvi1g1053 667 ProSiteProfiles C2 domain profile. 381 503 IPR000008 -
Vvi1g1053 667 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 39 667 - -
Vvi1g1053 667 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 400 528 IPR035892 -
Vvi1g1053 667 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 188 375 IPR031468 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1053 - - - vvi:100247873 1290.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1053 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008371 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35