Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g1054 | ATGGCATCACCAGCTTGGTTGCCGGTGGAAGTGCAGTCTTCAGCATCTCAGAATCCTGTCACTGGTTTACCTGCCGGAGGGCCTTCTGGGGGGCCTCCTACTCCAACTGGAGCCATTGCTCCTGCTTCAGTTGCTACTATACGTACTTCAGAGGGTGCAAGTGGTACTGCAAGTAATTCAATTCAAGAATCTGCTCAAGGAAAATTTGTTAATGCACCTCCCCATGTACTTCCAGGACCCTCATTCTCATACAGTGGTATTCCACATGTTACCACTGCATCTGGAACCTCACAGCAGTTACCATCTGGTTCAGTGATAAGTTCAAATCCACTAGCATCTACAGTGGTCTTTCAAACCCCAGTTCCTGGTCCCTCTTCATCTTCTGGTCCCTCATTCTCATACAACATTGCACATAAAGGTGCTGGTTTCCCTGGTAGCCAGCCGTTCCAATCTAGCACATCTATTGCTTCTGGTCCAAGAGGACCCACACCAAATGCTGCAAGCTTTTCTTTTAATGGTAACCCTCAATTGGTGCAGAAAGATCAAACCTTGAAATCTGATAACTCAGGGGCTGTTGCACAAGAAGCTGGTAGTATGTCTTCTGCTTCTCATGTCTCTCAGTCTGTTCCATTTCCTTGCTCAAGTTCTACAATGTCTGTATCTTCATCTCCCAAGATGGGCCCGACAACTTTATGGATGCCCTCTAACCCATCTTTTCCTGTGCCTTCTGGAATGCCTGTAACTCCTGGAACACCTGGCCCCCCTGGAATAGCTCCATCTACACCATTATCCTCCAATCTGGCTGTCCCATCTGCATCCATGGATTTCTCTTCTTCTGTGGTTTCAAGAGCTATTTTTCCGGCTGCTCCTGTTTCGTCAAACCCAGCTATTCAGCAGCAAATATATCCTTCCTATTCATCTTTGCCTGCCACAAATGCTTCCTCTCAGGGACCATGGTTGCAGCCCCCACAAATGGGTGGTTTGCCAAGGCCACCATTTGTACCTTATCCTGCTGTCTATCCCACTCCCTTTCCTTTGCCAGCCCATGGCATGCCTCTTCCTTCTGTTCCATTGCCTGATTCCCAACCTCCTGGAGTAACTCCAGTGGGAACTGCAGGTGGAACTCCTATATCTGCTGCAGTTTCAGGTCATCACCTGGCAAATACTTCAGGGATGCTGTCGGAATTACCTCCTCCAGGAATTGATGACAATAAGCATGTCAATGGTGCTGGAACCAAGGATGGAGCAGCTGTGAATGAACAAGTAGATGCCTGGACTGCCCACAAGACTGACACTGGAGTTGTGTACTACTATAATGCTTTAACAGGAGAATCCACTTATGAAAAACCCTCTGATTTTAAGGGAGAGGCTGATAAAGTTACCGTACAGCCAACTCCAGTTTCATGGGAAAAGTTGACTGGCACTGATTGGGCATTGGTTACCACTAATGATGGCAAAAAATATTACTACAACACCAAAACCAAGTTAAGCAGCTGGCAAATCCCAACTGAGTTGACTGAGATGAGAAAGAAGCAGGACAGTGTTGCTTTAAAAGAACATGCAATGTTAGCACCAAATACCAATGTGTCAACAGAAAAAGGGCCTTCCCCAATTGCTTTGAGTGCTCCTGCTGTTACCACTGGTGGACGTGATGCCACACCTCTTAGAACCTCAGCTGTTCCAGGATCAGCATCTGCCCTGGATATGATAAAAAAGAAGTTGCAGGACTCTGGAGCTCCTGCTACTTCTTCGCCTGTTCATTCATCTGGACCAATTGCATCAGAATTAAATGGTTCACGAGTGATTGAGCCCACAGTCAAGGGCCTGCAAAGTGAAAACAGCAAAGACAAGCTAAAAGACACTAATGGGGATGGTAATATGTCTGACTCTTCTTCAGATTCTGAGGATGTAGACAGTGGACCCACAAAGGAGGAGTGTATCATCCAATTCAAGGAGATGCTTAAGGAACGTGGAGTGGCACCTTTTTCAAAATGGGAGAAAGAACTGCCGAAGATTGTTTTTGATCCACGTTTCAAGGCTATTCCAGGCTATTCTGCTAGGAGATCCTTGTTTGAGCACTATGTTAGAACACGTGCTGAGGAGGAGCGAAAGGAAAAACGAGCAGCTCAGAGGGCTGCAATAGAGGGCTTCAAGCAGTTGCTGGAAGAAGCATCAGAGGATATTGATCACAAGACTGAGTATCAAACATTCAGAAAGAAATGGGGTGATGACCCGAGGTTCGAGGCTTTGGACCGCAAGGATCGGGAACTTCTGTTGAATGAAAGGGTCCTCCCTCTGAAGAGGGCTGCTGAAGAGAAGGCTCAAGCAATACGTGCAGCAGCTGTCTCTAGCTTCAAGTCCATGCTTCGTGACAAAGGAGATATAACAACAAGTACCCGTTGGTCCAGGGTGAAGGATAGCCTAAGGAATGACCCCAGATATAAATGTGTTAAACATGAGGATAGGGAGATTTTATTTAATGAGTATATATCTGAGTTAAAAGCTGCTGAAGAGGAAGTGGAACGAGAAGCAAAATCCAAAAAGGAGGAGCAGGATAAATTGAAGGAAAGGGAGCGAGAATTACGGAAACGGAAAGAAAGGGAAGAACAAGAAATGGAGAGGGTGCGACTGAAAGTGCGCAGAAAAGAGGCGGTATCATCTTATCAAGCCTTACTTGTGGAAACCATTAAGGACCCTCAGGTATCTTGGACGGAATCAAAGCCTAAATTGGAGAAAGATCCACAAGCACGTGCAACAAATTCTGATCTTGATCCATCTGACCTGGAGAAGCTCTTCCGGGAACACATAAAGATGCTTCATGAGCGGCGTGCACACGAGTTTAGAGCTTTGTTGTCTGAAGTCCTAACTGCAGAAGCAGCTACACAGGAGACTGAAGATGGAAAAACAGTTCTGACATCATGGTCGACGGCCAAACGTCTGCTGAGATCTGATACCAGGTATATAAAGATGCCAAGAAAAGATAGGGAATCAGTATGGCGCAGATATAGCGAGGAGATGCTGCGGAAGCAAAAATTGGCGCAGGATCAAACTGAAGAGAAGCATACAGAAGTAAAAGGTAGAAGCTCTGTTGATTCCGGGAGATTTCCATCTGGGTCAAGGAGAGCCCATGAGCGAAGATGA | 3141 | 46.29 | MASPAWLPVEVQSSASQNPVTGLPAGGPSGGPPTPTGAIAPASVATIRTSEGASGTASNSIQESAQGKFVNAPPHVLPGPSFSYSGIPHVTTASGTSQQLPSGSVISSNPLASTVVFQTPVPGPSSSSGPSFSYNIAHKGAGFPGSQPFQSSTSIASGPRGPTPNAASFSFNGNPQLVQKDQTLKSDNSGAVAQEAGSMSSASHVSQSVPFPCSSSTMSVSSSPKMGPTTLWMPSNPSFPVPSGMPVTPGTPGPPGIAPSTPLSSNLAVPSASMDFSSSVVSRAIFPAAPVSSNPAIQQQIYPSYSSLPATNASSQGPWLQPPQMGGLPRPPFVPYPAVYPTPFPLPAHGMPLPSVPLPDSQPPGVTPVGTAGGTPISAAVSGHHLANTSGMLSELPPPGIDDNKHVNGAGTKDGAAVNEQVDAWTAHKTDTGVVYYYNALTGESTYEKPSDFKGEADKVTVQPTPVSWEKLTGTDWALVTTNDGKKYYYNTKTKLSSWQIPTELTEMRKKQDSVALKEHAMLAPNTNVSTEKGPSPIALSAPAVTTGGRDATPLRTSAVPGSASALDMIKKKLQDSGAPATSSPVHSSGPIASELNGSRVIEPTVKGLQSENSKDKLKDTNGDGNMSDSSSDSEDVDSGPTKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPGYSARRSLFEHYVRTRAEEERKEKRAAQRAAIEGFKQLLEEASEDIDHKTEYQTFRKKWGDDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAVSSFKSMLRDKGDITTSTRWSRVKDSLRNDPRYKCVKHEDREILFNEYISELKAAEEEVEREAKSKKEEQDKLKERERELRKRKEREEQEMERVRLKVRRKEAVSSYQALLVETIKDPQVSWTESKPKLEKDPQARATNSDLDPSDLEKLFREHIKMLHERRAHEFRALLSEVLTAEAATQETEDGKTVLTSWSTAKRLLRSDTRYIKMPRKDRESVWRRYSEEMLRKQKLAQDQTEEKHTEVKGRSSVDSGRFPSGSRRAHERR* | 1047 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 17503355 | 17552700 | + | Vvi1g1054 | Vvi1g1054 | 770254 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g1054 | 1046 | SMART | FF_2 | 643 | 697 | IPR002713 | - | |
| Vvi1g1054 | 1046 | SMART | FF_2 | 710 | 765 | IPR002713 | - | |
| Vvi1g1054 | 1046 | SMART | FF_2 | 881 | 938 | IPR002713 | - | |
| Vvi1g1054 | 1046 | SMART | FF_2 | 778 | 832 | IPR002713 | - | |
| Vvi1g1054 | 1046 | Gene3D | FF domain | 767 | 845 | IPR036517 | - | |
| Vvi1g1054 | 1046 | MobiDBLite | consensus disorder prediction | 841 | 870 | - | - | |
| Vvi1g1054 | 1046 | ProSiteProfiles | FF domain profile. | 881 | 938 | IPR002713 | - | |
| Vvi1g1054 | 1046 | MobiDBLite | consensus disorder prediction | 143 | 208 | - | - | |
| Vvi1g1054 | 1046 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR HOMOLOG | 164 | 1046 | - | - | |
| Vvi1g1054 | 1046 | ProSitePatterns | WW/rsp5/WWP domain signature. | 477 | 502 | IPR001202 | GO:0005515 | |
| Vvi1g1054 | 1046 | Gene3D | - | 463 | 521 | - | - | |
| Vvi1g1054 | 1046 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 425 | 452 | IPR001202 | GO:0005515 | |
| Vvi1g1054 | 1046 | Gene3D | - | 420 | 462 | - | - | |
| Vvi1g1054 | 1046 | SUPERFAMILY | WW domain | 424 | 456 | IPR036020 | GO:0005515 | |
| Vvi1g1054 | 1046 | SUPERFAMILY | FF domain | 773 | 839 | IPR036517 | - | |
| Vvi1g1054 | 1046 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 164 | 1046 | IPR045148 | GO:0003712|GO:0070063 | |
| Vvi1g1054 | 1046 | Coils | Coil | 826 | 885 | - | - | |
| Vvi1g1054 | 1046 | MobiDBLite | consensus disorder prediction | 574 | 642 | - | - | |
| Vvi1g1054 | 1046 | MobiDBLite | consensus disorder prediction | 577 | 595 | - | - | |
| Vvi1g1054 | 1046 | MobiDBLite | consensus disorder prediction | 904 | 924 | - | - | |
| Vvi1g1054 | 1046 | MobiDBLite | consensus disorder prediction | 1009 | 1028 | - | - | |
| Vvi1g1054 | 1046 | CDD | WW | 475 | 504 | IPR001202 | GO:0005515 | |
| Vvi1g1054 | 1046 | MobiDBLite | consensus disorder prediction | 544 | 563 | - | - | |
| Vvi1g1054 | 1046 | SUPERFAMILY | FF domain | 939 | 1011 | IPR036517 | - | |
| Vvi1g1054 | 1046 | Gene3D | FF domain | 878 | 938 | IPR036517 | - | |
| Vvi1g1054 | 1046 | Gene3D | FF domain | 939 | 1005 | IPR036517 | - | |
| Vvi1g1054 | 1046 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
| Vvi1g1054 | 1046 | ProSiteProfiles | FF domain profile. | 710 | 765 | IPR002713 | - | |
| Vvi1g1054 | 1046 | SUPERFAMILY | FF domain | 642 | 703 | IPR036517 | - | |
| Vvi1g1054 | 1046 | Gene3D | FF domain | 641 | 708 | IPR036517 | - | |
| Vvi1g1054 | 1046 | MobiDBLite | consensus disorder prediction | 903 | 924 | - | - | |
| Vvi1g1054 | 1046 | CDD | WW | 425 | 452 | IPR001202 | GO:0005515 | |
| Vvi1g1054 | 1046 | SMART | ww_5 | 420 | 452 | IPR001202 | GO:0005515 | |
| Vvi1g1054 | 1046 | SMART | ww_5 | 472 | 504 | IPR001202 | GO:0005515 | |
| Vvi1g1054 | 1046 | SUPERFAMILY | FF domain | 702 | 771 | IPR036517 | - | |
| Vvi1g1054 | 1046 | SUPERFAMILY | FF domain | 874 | 942 | IPR036517 | - | |
| Vvi1g1054 | 1046 | Pfam | WW domain | 424 | 450 | IPR001202 | GO:0005515 | |
| Vvi1g1054 | 1046 | ProSiteProfiles | FF domain profile. | 778 | 832 | IPR002713 | - | |
| Vvi1g1054 | 1046 | MobiDBLite | consensus disorder prediction | 1009 | 1046 | - | - | |
| Vvi1g1054 | 1046 | ProSiteProfiles | FF domain profile. | 643 | 697 | IPR002713 | - | |
| Vvi1g1054 | 1046 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 477 | 504 | IPR001202 | GO:0005515 | |
| Vvi1g1054 | 1046 | Pfam | FF domain | 883 | 935 | IPR002713 | - | |
| Vvi1g1054 | 1046 | Pfam | FF domain | 713 | 760 | IPR002713 | - | |
| Vvi1g1054 | 1046 | Pfam | FF domain | 781 | 829 | IPR002713 | - | |
| Vvi1g1054 | 1046 | Pfam | FF domain | 649 | 694 | IPR002713 | - | |
| Vvi1g1054 | 1046 | ProSitePatterns | WW/rsp5/WWP domain signature. | 425 | 450 | IPR001202 | GO:0005515 | |
| Vvi1g1054 | 1046 | Gene3D | FF domain | 709 | 766 | IPR036517 | - | |
| Vvi1g1054 | 1046 | SUPERFAMILY | WW domain | 476 | 508 | IPR036020 | GO:0005515 | |
| Vvi1g1054 | 1046 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Vvi1g1054 | 1046 | MobiDBLite | consensus disorder prediction | 145 | 208 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g1054 | K12824 | TCERG1, CA150; transcription elongation regulator 1 | - | vvi:100254722 | 1877.83 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi1g1054 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009701 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 33 |